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(-)Theoretical Model
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Theoretical Model  (Jmol Viewer)

(-) Description

Title :  STUCTURAL MODEL OF E. COLI HFQ
 
Authors :  V. Arluison, P. Derreumaux, F. Allemand, M. Folichon, E. Hajnsdorf, P. Regnier
Date :  19 Jul 02  (Deposition) - 07 Aug 02  (Release) - 07 Aug 02  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A,B,C,D,E,F
Keywords :  Rna Binding Protein, Mrna Stability, Polyadenaylation, Sm- Like (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Arluison, P. Derreumaux, F. Allemand, M. Folichon, E. Hajnsdorf, P. Regnier
Structural Modelling Of The Sm-Like Protein Hfq From Escherichia Coli.
J. Mol. Biol. V. 320 705 2002
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HFQ PROTEIN
    Chains: A, B, C, D, E, F
    Fragment: SM-LIKE N-TERMINAL REGION
    Organism Common: BACTERIA
    Organism Scientific: ESCHERICHIA COLI

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1M7C)

(-) Sites  (0, 0)

(no "Site" information available for 1M7C)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1M7C)

(-) Cis Peptide Bonds  (7, 7)

Theoretical Model
No.Residues
1Arg A:58 -Pro A:59
2Arg B:126 -Pro B:127
3Arg C:194 -Pro C:195
4Val D:246 -Ser D:247
5Arg D:262 -Pro D:263
6Arg E:330 -Pro E:331
7Arg F:398 -Pro F:399

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1M7C)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1M7C)

(-) Exons   (0, 0)

(no "Exon" information available for 1M7C)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:68
 aligned with HFQ_ECO57 | P0A6X5 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:68
                                    18        28        38        48        58        68        
            HFQ_ECO57     9 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG  76
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhh.....eee.....eee.eeeee....eeeee...eeeee.hhh...ee....hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1m7c A   1 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG  68
                                    10        20        30        40        50        60        


Chain A from PDB  Type:PROTEIN  Length:68
 aligned with HFQ_ECOL6 | P0A6X4 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:68
                                    18        28        38        48        58        68        
            HFQ_ECOL6     9 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG  76
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhh.....eee.....eee.eeeee....eeeee...eeeee.hhh...ee....hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1m7c A   1 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG  68
                                    10        20        30        40        50        60        


Chain A from PDB  Type:PROTEIN  Length:68
 aligned with HFQ_ECOLI | P0A6X3 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:68
                                    18        28        38        48        58        68        
            HFQ_ECOLI     9 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG  76
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhh.....eee.....eee.eeeee....eeeee...eeeee.hhh...ee....hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1m7c A   1 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG  68
                                    10        20        30        40        50        60        


Chain A from PDB  Type:PROTEIN  Length:68
 aligned with HFQ_SHIFL | P0A6X6 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:68
                                    18        28        38        48        58        68        
            HFQ_SHIFL     9 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG  76
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhh.....eee.....eee.eeeee....eeeee...eeeee.hhh...ee....hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1m7c A   1 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG  68
                                    10        20        30        40        50        60        


Chain B from PDB  Type:PROTEIN  Length:68
 aligned with HFQ_ECO57 | P0A6X5 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:68
                                    18        28        38        48        58        68        
            HFQ_ECO57     9 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG  76
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh...eeeeeee....eeeeeeeee....eeeee...eeeee...ee........hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1m7c B  69 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG 136
                                    78        88        98       108       118       128        


Chain B from PDB  Type:PROTEIN  Length:68
 aligned with HFQ_ECOL6 | P0A6X4 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:68
                                    18        28        38        48        58        68        
            HFQ_ECOL6     9 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG  76
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh...eeeeeee....eeeeeeeee....eeeee...eeeee...ee........hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1m7c B  69 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG 136
                                    78        88        98       108       118       128        


Chain B from PDB  Type:PROTEIN  Length:68
 aligned with HFQ_ECOLI | P0A6X3 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:68
                                    18        28        38        48        58        68        
            HFQ_ECOLI     9 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG  76
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh...eeeeeee....eeeeeeeee....eeeee...eeeee...ee........hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1m7c B  69 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG 136
                                    78        88        98       108       118       128        


Chain B from PDB  Type:PROTEIN  Length:68
 aligned with HFQ_SHIFL | P0A6X6 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:68
                                    18        28        38        48        58        68        
            HFQ_SHIFL     9 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG  76
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh...eeeeeee....eeeeeeeee....eeeee...eeeee...ee........hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1m7c B  69 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG 136
                                    78        88        98       108       118       128        


Chain C from PDB  Type:PROTEIN  Length:68
 aligned with HFQ_ECO57 | P0A6X5 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:68
                                    18        28        38        48        58        68        
            HFQ_ECO57     9 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG  76
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh....eeeee.....eeeeeeeee....eeeee...eeeee.hhh...ee....hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1m7c C 137 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG 204
                                   146       156       166       176       186       196        


Chain C from PDB  Type:PROTEIN  Length:68
 aligned with HFQ_ECOL6 | P0A6X4 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:68
                                    18        28        38        48        58        68        
            HFQ_ECOL6     9 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG  76
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh....eeeee.....eeeeeeeee....eeeee...eeeee.hhh...ee....hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1m7c C 137 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG 204
                                   146       156       166       176       186       196        


Chain C from PDB  Type:PROTEIN  Length:68
 aligned with HFQ_ECOLI | P0A6X3 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:68
                                    18        28        38        48        58        68        
            HFQ_ECOLI     9 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG  76
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh....eeeee.....eeeeeeeee....eeeee...eeeee.hhh...ee....hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1m7c C 137 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG 204
                                   146       156       166       176       186       196        


Chain C from PDB  Type:PROTEIN  Length:68
 aligned with HFQ_SHIFL | P0A6X6 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:68
                                    18        28        38        48        58        68        
            HFQ_SHIFL     9 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG  76
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh....eeeee.....eeeeeeeee....eeeee...eeeee.hhh...ee....hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1m7c C 137 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG 204
                                   146       156       166       176       186       196        


Chain D from PDB  Type:PROTEIN  Length:68
 aligned with HFQ_ECO57 | P0A6X5 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:68
                                    18        28        38        48        58        68        
            HFQ_ECO57     9 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG  76
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh....eeeeee....eeeeeeeee....eeeee...eeeee...ee........hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1m7c D 205 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG 272
                                   214       224       234       244       254       264        


Chain D from PDB  Type:PROTEIN  Length:68
 aligned with HFQ_ECOL6 | P0A6X4 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:68
                                    18        28        38        48        58        68        
            HFQ_ECOL6     9 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG  76
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh....eeeeee....eeeeeeeee....eeeee...eeeee...ee........hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1m7c D 205 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG 272
                                   214       224       234       244       254       264        


Chain D from PDB  Type:PROTEIN  Length:68
 aligned with HFQ_ECOLI | P0A6X3 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:68
                                    18        28        38        48        58        68        
            HFQ_ECOLI     9 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG  76
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh....eeeeee....eeeeeeeee....eeeee...eeeee...ee........hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1m7c D 205 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG 272
                                   214       224       234       244       254       264        


Chain D from PDB  Type:PROTEIN  Length:68
 aligned with HFQ_SHIFL | P0A6X6 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:68
                                    18        28        38        48        58        68        
            HFQ_SHIFL     9 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG  76
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh....eeeeee....eeeeeeeee....eeeee...eeeee...ee........hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1m7c D 205 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG 272
                                   214       224       234       244       254       264        


Chain E from PDB  Type:PROTEIN  Length:68
 aligned with HFQ_ECO57 | P0A6X5 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:68
                                    18        28        38        48        58        68        
            HFQ_ECO57     9 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG  76
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh....eeeee.....eeeeeeeee....eeeee...eeeee.hhh...ee....hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1m7c E 273 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG 340
                                   282       292       302       312       322       332        


Chain E from PDB  Type:PROTEIN  Length:68
 aligned with HFQ_ECOL6 | P0A6X4 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:68
                                    18        28        38        48        58        68        
            HFQ_ECOL6     9 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG  76
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh....eeeee.....eeeeeeeee....eeeee...eeeee.hhh...ee....hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1m7c E 273 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG 340
                                   282       292       302       312       322       332        


Chain E from PDB  Type:PROTEIN  Length:68
 aligned with HFQ_ECOLI | P0A6X3 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:68
                                    18        28        38        48        58        68        
            HFQ_ECOLI     9 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG  76
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh....eeeee.....eeeeeeeee....eeeee...eeeee.hhh...ee....hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1m7c E 273 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG 340
                                   282       292       302       312       322       332        


Chain E from PDB  Type:PROTEIN  Length:68
 aligned with HFQ_SHIFL | P0A6X6 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:68
                                    18        28        38        48        58        68        
            HFQ_SHIFL     9 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG  76
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh....eeeee.....eeeeeeeee....eeeee...eeeee.hhh...ee....hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1m7c E 273 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG 340
                                   282       292       302       312       322       332        


Chain F from PDB  Type:PROTEIN  Length:68
 aligned with HFQ_ECO57 | P0A6X5 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:68
                                    18        28        38        48        58        68        
            HFQ_ECO57     9 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG  76
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh....eeeeee....eeeeeeeee....eeeee...eeeee...ee........hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1m7c F 341 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG 408
                                   350       360       370       380       390       400        


Chain F from PDB  Type:PROTEIN  Length:68
 aligned with HFQ_ECOL6 | P0A6X4 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:68
                                    18        28        38        48        58        68        
            HFQ_ECOL6     9 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG  76
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh....eeeeee....eeeeeeeee....eeeee...eeeee...ee........hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1m7c F 341 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG 408
                                   350       360       370       380       390       400        


Chain F from PDB  Type:PROTEIN  Length:68
 aligned with HFQ_ECOLI | P0A6X3 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:68
                                    18        28        38        48        58        68        
            HFQ_ECOLI     9 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG  76
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh....eeeeee....eeeeeeeee....eeeee...eeeee...ee........hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1m7c F 341 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG 408
                                   350       360       370       380       390       400        


Chain F from PDB  Type:PROTEIN  Length:68
 aligned with HFQ_SHIFL | P0A6X6 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:68
                                    18        28        38        48        58        68        
            HFQ_SHIFL     9 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG  76
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh....eeeeee....eeeeeeeee....eeeee...eeeee...ee........hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1m7c F 341 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAG 408
                                   350       360       370       380       390       400
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1M7C)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1M7C)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1M7C)

(-) Gene Ontology  (8, 14)

Theoretical Model(hide GO term definitions)
Chain A,B,C,D,E,F   (HFQ_ECOL6 | P0A6X4)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
biological process
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.

Chain A,B,C,D,E,F   (HFQ_SHIFL | P0A6X6)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
biological process
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.

Chain A,B,C,D,E,F   (HFQ_ECOLI | P0A6X3)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0003681    bent DNA binding    Interacting selectively and non-covalently with DNA in a bent conformation.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0040033    negative regulation of translation, ncRNA-mediated    Any process, mediated by small non-coding RNAs, that stops, prevents or reduces the rate that mRNAs are effectively translated into protein.
    GO:0045975    positive regulation of translation, ncRNA-mediated    Any process, mediated by small non-coding RNAs, that activates or increases the rate that mRNAs are effectively translated into protein.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

Chain A,B,C,D,E,F   (HFQ_ECO57 | P0A6X5)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
biological process
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.

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  Cis Peptide Bonds
    Arg A:58 - Pro A:59   [ RasMol ]  
    Arg B:126 - Pro B:127   [ RasMol ]  
    Arg C:194 - Pro C:195   [ RasMol ]  
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  1m7c
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  HFQ_ECO57 | P0A6X5
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  HFQ_ECOL6 | P0A6X4
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  HFQ_ECOLI | P0A6X3
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  HFQ_SHIFL | P0A6X6
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  HFQ_ECO57 | P0A6X5
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  HFQ_ECOLI | P0A6X3
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  HFQ_SHIFL | P0A6X6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HFQ_ECO57 | P0A6X5: 1oou 1oov
        HFQ_ECOL6 | P0A6X4: 1oou 1oov
        HFQ_ECOLI | P0A6X3: 1hk9 1oou 1oov 2y90 2yht 3gib 3qhs 3qo3 3rer 3res 3vu3 4jri 4jrk 4juv 4rcb 4rcc 4v2s
        HFQ_SHIFL | P0A6X6: 1oou 1oov

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1M7C)