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(-) Description

Title :  CRYSTAL STRUCTURE OF THE RESPONSE REGULATOR DIVK. STRUCTURE AT PH 8.0 IN THE APO-FORM
 
Authors :  V. Guillet, N. Ohta, S. Cabantous, A. Newton, J. -P. Samama, Structural Proteomics In Europe (Spine)
Date :  10 Jul 02  (Deposition) - 15 Nov 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.87
Chains :  Asym./Biol. Unit :  A
Keywords :  Response Regulator, Signal Transduction Protein, Structural Proteomics In Europe, Spine, Structural Genomics, Signaling Protein, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Guillet, N. Ohta, S. Cabantous, A. Newton, J. -P. Samama
Crystallographic And Biochemical Studies Of Divk Reveal Novel Features Of An Essential Response Regulator In Caulobacter Crescentus
J. Biol. Chem. V. 277 42003 2002
PubMed-ID: 12176983  |  Reference-DOI: 10.1074/JBC.M204789200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CELL DIVISION RESPONSE REGULATOR DIVK
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PT7-7 PZHF55
    Expression System Strain: BL21-DE3-PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: DIVK
    Organism Scientific: CAULOBACTER VIBRIOIDES
    Organism Taxid: 155892
    Other Details: STRUCTURE AT PH 8.0 IN THE APO-FORM
    Synonym: POLAR DIFFERENTIATION RESPONSE REGULATOR

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1M5U)

(-) Sites  (0, 0)

(no "Site" information available for 1M5U)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1M5U)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys A:105 -Pro A:106

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1M5U)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1M5U)

(-) Exons   (0, 0)

(no "Exon" information available for 1M5U)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:113
 aligned with Q9A5I4_CAUCR | Q9A5I4 from UniProtKB/TrEMBL  Length:130

    Alignment length:123
                                    16        26        36        46        56        66        76        86        96       106       116       126   
         Q9A5I4_CAUCR     7 TKKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLERQP 129
               SCOP domains d1m5ua_ A: Cell division response regulator DivK                                                                            SCOP domains
               CATH domains 1m5uA00 A:2-124  [code=3.40.50.2300, no name defined]                                                                       CATH domains
               Pfam domains ---Response_reg-1m5uA01 A:5-117                                                                                     ------- Pfam domains
         Sec.struct. author ..eeeee..hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhh..eeeee......hhhhhhhhhhhh.......eeeee.---------..-....eeee...hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 1m5u A   2 TKKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTA---------IR-GGCEAYISKPISVVHFLETIKRLLERQP 124
                                    11        21        31        41        51        61        71        81  |      -  || | 101       111       121   
                                                                                                             84        94| |                           
                                                                                                                        95 |                           
                                                                                                                          97
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: CheY (97)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q9A5I4_CAUCR | Q9A5I4)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0000160    phosphorelay signal transduction system    A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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  Cis Peptide Bonds
    Lys A:105 - Pro A:106   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9A5I4_CAUCR | Q9A5I4: 1m5t 1mav 1mb0 1mb3

(-) Related Entries Specified in the PDB File

1m5t THE SAME PROTEIN AT PH 6.0 RELATED ID: IGBMC-1121-000 RELATED DB: TARGETDB