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(-) Description

Title :  NMR SOLUTION STRUCTURE OF THE ANTICODON OF YEAST TRNA-PHE WITH 3 MODIFICATIONS (OMC32 OMG34 M5C40)
 
Authors :  J. W. Stuart, K. M. Koshlap, R. H. Guenther, P. F. Agris
Date :  23 May 02  (Deposition) - 09 Sep 03  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
Keywords :  Trna, Anticodon Stem Loop, Trna Domain, Rna Hairpin, 2'-O- Methyl, M5C (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. W. Stuart, K. M. Koshlap, R. Guenther, P. F. Agris
Naturally-Occurring Modification Restricts The Anticodon Domain Conformational Space Of Trna(Phe).
J. Mol. Biol. V. 334 901 2003
PubMed-ID: 14643656  |  Reference-DOI: 10.1016/J.JMB.2003.09.058
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-R(*CP*CP*AP*GP*AP*(OMC)P*UP*(OMG) P*AP*AP*GP*AP*UP*(5MC)P*UP*GP*G)-3'
    ChainsA
    EngineeredYES
    Other DetailsANTICODON (RESIDUES 27-43) OF TRNA-PHE WITH THREE MODIFIED RESIDUES (OMC AT POSITION 32, OMG AT 34, M5C AT POSITION 40)
    Other Details - SourceSEQUENCE WITH NATURALLY OCCURRING MODIFICATIONS SYNTHESIZED USING PHOSPHORAMIDITE CHEMISTRY.
    SyntheticYES

 Structural Features

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NMR Structure (10x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

NMR Structure (3, 3)
No.NameCountTypeFull Name
15MC1Mod. Nucleotide5-METHYLCYTIDINE-5'-MONOPHOSPHATE
2OMC1Mod. NucleotideO2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
3OMG1Mod. NucleotideO2'-METHYLGUANOSINE-5'-MONOPHOSPHATE

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:RNA  Length:17
                                                
                  1lux A 27 CCAGAcUgAAGAUcUGG 43
                                 | |36   |   
                                 | |     |   
                                32-OMC   |   
                                  34-OMG |   
                                        40-5MC

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1luu NMR SOLUTION STRUCTURE OF THE ANTICODON OF YEAST TRNA-PHE WITH 4 MODIFICATIONS (OMC32 OMG34 1MG37 5MC40)