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(-) Description

Title :  NMR STRUCTURE OF APOLIPOPHORIN-III FROM LOCUSTA MIGRATORIA
 
Authors :  D. Fan, J. Wang
Date :  16 May 02  (Deposition) - 17 Jun 03  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (21x)
Keywords :  Helix-Bundle, Exchangeable Apolipoprotein, Lipid Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Fan, Y. Zheng, D. Yang, J. Wang
Nmr Solution Structure And Dynamics Of An Exchangeable Apolipoprotein, Locusta Migratoria Apolipophorin Iii.
J. Biol. Chem. V. 278 21212 2003
PubMed-ID: 12621043  |  Reference-DOI: 10.1074/JBC.M208486200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - APOLIPOPHORIN-III
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: LAPOIII-PET22B
    Expression System Strain: BL-21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Common: MIGRATORY LOCUST
    Organism Scientific: LOCUSTA MIGRATORIA
    Organism Taxid: 7004
    Synonym: APOLP-III

 Structural Features

(-) Chains, Units

  
NMR Structure (21x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1LS4)

(-) Sites  (0, 0)

(no "Site" information available for 1LS4)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1LS4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1LS4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1LS4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1LS4)

(-) Exons   (0, 0)

(no "Exon" information available for 1LS4)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:164
 aligned with APL3_LOCMI | P10762 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:164
                                                                                                                                                    138                                         
                                                                                                                                                  137 |                                         
                                    26        36        46        56        66        76        86        96       106       116       126       136| |    145       155       165       175    
           APL3_LOCMI    17 RPDAAGHVNIAEAVQQLNHTIVNAAHELHETLGLPTPDEALNLLTEQANAFKTKIAEVTTSLKQEAEKHQGSVAEQLNRFARNLNNSIHDAATSAQPADQLNSLQSALTNVGHQWQTSQPR-PSVAQEAWAPVQSALQEAAEKTKEAAANLQNSIQSAVQKPAN 179
               SCOP domains d1ls4a_ A: Apolipophorin-III                                                                                                                                         SCOP domains
               CATH domains 1ls4A00 A:1-164 Apolipoprotein (APOA1 / APOA4 / APOE FAMILY)                                                                                                         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ls4 A   1 RPDAAGHVNIAEAVQQLNHTIVNAAHELHETLGLPTPDEALNLLTEQANAFKTKIAEVTTSLKQEAEKHQGSVAEQLNAFARNLNNSIHDAATSLNLQDQLNSLQSALTNVGHQWQDIATKTQASAQEAWAPVQSALQEAAEKTKEAAANLQNSIQSAVQKPAN 164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1LS4)

(-) Gene Ontology  (3, 3)

NMR Structure(hide GO term definitions)
Chain A   (APL3_LOCMI | P10762)
biological process
    GO:0006869    lipid transport    The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        APL3_LOCMI | P10762: 1aep

(-) Related Entries Specified in the PDB File

1aep THE X-RAY CRYSTAL STRUCTURE OF APOLIPOPHORIN-III FROM LOCUSTA MIGRATORIA (A ISOFORM OF 162-RESIDUES)
1eq1 THE NMR STRUCTURE OF ANOTHER APOLIPOPHORIN-III FROM MANDUCA SEXTA