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(-) Description

Title :  A LEUCINE-RICH REPEAT VARIANT WITH A NOVEL REPETITIVE PROTEIN STRUCTURAL MOTIF
 
Authors :  J. W. Peters, M. H. B. Stowell, D. C. Rees
Date :  05 Nov 96  (Deposition) - 12 Mar 97  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Leucine-Rich Repeats, Repetitive Structure, Iron Sulfur Proteins, Nitrogen Fixation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. W. Peters, M. H. Stowell, D. C. Rees
A Leucine-Rich Repeat Variant With A Novel Repetitive Protein Structural Motif.
Nat. Struct. Biol. V. 3 991 1996
PubMed-ID: 8946850  |  Reference-DOI: 10.1038/NSB1296-991
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - LEUCINE-RICH REPEAT VARIANT
    Cell Line: BL21
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PT7-7
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Gene: NITROGEN FIXATION SPECIFIC, OPEN READING FRAME 2 (ORF2)
    Organism Scientific: AZOTOBACTER VINELANDII
    Organism Taxid: 354
    Synonym: LRV

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1LRV)

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1FS4UNKNOWNCYS A:14 , CYS A:17 , CYS A:29 , CYS A:35FES CLUSTER CYSTEINYL LIGANDS.

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1LRV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1LRV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1LRV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1LRV)

(-) Exons   (0, 0)

(no "Exon" information available for 1LRV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:233
 aligned with Q44534_AZOVI | Q44534 from UniProtKB/TrEMBL  Length:244

    Alignment length:233
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238   
         Q44534_AZOVI     9 TPIGDCRVCSFRMSLLLTGRCTPGDACVAVESGRQIDRFFRNNPHLAVQYLADPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHASLEALRELDEPDPEVRLAIAGRL 241
               SCOP domains d1lrva_ A: Leucine-rich repeat variant                                                                                                                                                                                                    SCOP domains
               CATH domains 1lrvA00 A:9-241 Leucine-rich Repeat Variant                                                                                                                                                                                               CATH domains
           Pfam domains (1) LRV_FeS-1lrvA05 A:9-58                            -----------------------------------------------------------------------------------------------------------------------------LRV-1lrvA01 A:184-207   ---------------------------------- Pfam domains (1)
           Pfam domains (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRV-1lrvA02 A:184-207   ---------------------------------- Pfam domains (2)
           Pfam domains (3) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRV-1lrvA03 A:184-207   ---------------------------------- Pfam domains (3)
           Pfam domains (4) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRV-1lrvA04 A:184-207   ---------------------------------- Pfam domains (4)
         Sec.struct. author ................................hhhhhhhhhh.hhhhhhh.....hhhhhhhh....hhhhhhh.....hhhhhhhh.....hhhhh......hhhhhhhhhh...hhhhhh.....hhhhhhhhhh..hhhhhh......hhhhhhhhhh..hhhhhh......hhhhhhhhhh..hhhhhhhhh...hhhhhhhhhh..hhhhhh.....hhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1lrv A   9 TPIGDCRVCSFRMSLLLTGRCTPGDACVAVESGRQIDRFFRNNPHLAVQYLADPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHASLEALRELDEPDPEVRLAIAGRL 241
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (2, 5)

Asymmetric/Biological Unit
(-)
Clan: TPR (230)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1LRV)

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  1lrv
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

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