Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF DEOXYGENATED HEMOCYANIN FROM RAPANA THOMASIANA
 
Authors :  M. Perbandt, E. W. Guthoehrlein, W. Rypniewski, K. Idakieva, S. Stoeva W. Voelter, N. Genov, C. Betzel
Date :  03 May 02  (Deposition) - 03 Jun 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.30
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (2x)
Keywords :  Hemocyanin, Deoxygenated Form, Oxygen, Metal Binding Site, Cooperativity, Oxygen Storage-Transport Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Perbandt, E. W. Guthoehrlein, W. Rypniewski, K. Idakieva, S. Stoeva, W. Voelter, N. Genov, C. Betzel
The Structure Of A Functional Unit From The Wall Of A Gastropod Hemocyanin Offers A Possible Mechanism For Cooperativity
Biochemistry V. 42 6341 2003
PubMed-ID: 12767214  |  Reference-DOI: 10.1021/BI020672X

(-) Compounds

Molecule 1 - HEMOCYANIN
    Chains: A, B, C
    Organism Scientific: RAPANA THOMASIANA
    Organism Taxid: 29165

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (2x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric Unit (2, 12)
No.NameCountTypeFull Name
1CU9Ligand/IonCOPPER (II) ION
2NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1CU-1Ligand/IonCOPPER (II) ION
2NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:9 , LEU A:10 , SER A:11BINDING SITE FOR RESIDUE NAG A 600
02AC2SOFTWAREASP C:112 , ASN C:119 , PHE C:120 , NAG C:651BINDING SITE FOR RESIDUE NAG C 650
03AC3SOFTWARENAG C:650BINDING SITE FOR RESIDUE NAG C 651
04AC4SOFTWAREHIS A:41 , CYS A:59 , HIS A:61 , HIS A:70 , CU A:5012BINDING SITE FOR RESIDUE CU A 5001
05AC5SOFTWAREHIS A:70 , HIS A:181 , HIS A:185 , HIS A:212 , CU A:5001BINDING SITE FOR RESIDUE CU A 5012
06AC6SOFTWAREHIS A:-2 , ARG A:-1 , HIS B:117BINDING SITE FOR RESIDUE CU B 5503
07AC7SOFTWAREHIS B:41 , HIS B:61 , HIS B:70 , CU B:5015BINDING SITE FOR RESIDUE CU B 5004
08AC8SOFTWAREHIS B:70 , HIS B:181 , HIS B:185 , HIS B:212 , CU B:5004BINDING SITE FOR RESIDUE CU B 5015
09AC9SOFTWAREHIS B:-2 , ARG B:-1 , HIS C:277BINDING SITE FOR RESIDUE CU B 5506
10BC1SOFTWAREHIS C:41 , HIS C:61 , HIS C:70 , CU C:5018BINDING SITE FOR RESIDUE CU C 5007
11BC2SOFTWAREHIS C:70 , HIS C:181 , HIS C:185 , HIS C:212 , CU C:5007BINDING SITE FOR RESIDUE CU C 5018
12BC3SOFTWAREHIS B:277 , ARG C:-1 , HIS C:-2BINDING SITE FOR RESIDUE CU C 5509

(-) SS Bonds  (9, 9)

Asymmetric Unit
No.Residues
1A:47 -A:58
2A:171 -A:238
3A:328 -A:334
4B:47 -B:58
5B:171 -B:238
6B:328 -B:334
7C:47 -C:58
8C:171 -C:238
9C:328 -C:334

(-) Cis Peptide Bonds  (9, 9)

Asymmetric Unit
No.Residues
1Gln A:43 -Pro A:44
2Lys A:248 -Pro A:249
3Ala A:254 -Pro A:255
4Gln B:43 -Pro B:44
5Lys B:248 -Pro B:249
6Ala B:254 -Pro B:255
7Gln C:43 -Pro C:44
8Lys C:248 -Pro C:249
9Ala C:254 -Pro C:255

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1LNL)

(-) PROSITE Motifs  (2, 6)

Asymmetric Unit (2, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TYROSINASE_1PS00497 Tyrosinase CuA-binding region signature.HCY2E_RAPVE69-86
 
 		  3A:61-78
B:61-78
C:61-78
2TYROSINASE_2PS00498 Tyrosinase and hemocyanins CuB-binding region signature.HCY2E_RAPVE213-224
 
 		  3A:205-216
B:205-216
C:205-216
Biological Unit 1 (2, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TYROSINASE_1PS00497 Tyrosinase CuA-binding region signature.HCY2E_RAPVE69-86
 
 		  6A:61-78
B:61-78
C:61-78
2TYROSINASE_2PS00498 Tyrosinase and hemocyanins CuB-binding region signature.HCY2E_RAPVE213-224
 
 		  6A:205-216
B:205-216
C:205-216

(-) Exons   (0, 0)

(no "Exon" information available for 1LNL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:408
 aligned with HCY2E_RAPVE | P83040 from UniProtKB/Swiss-Prot  Length:413

    Alignment length:408
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405        
          HCY2E_RAPVE     6 THRNLVRKSVRNLSPAERRSLVHALKSLQEDSSADGFQSLASFHAQPPLCPYPEANKRFACCVHGMATFPEWHRLYTVQFEDALRRHGSVVGIPYWDTVVPQEDLPAFFNDEIWDDPLFHANFTNPFNGADIDFNHQKIARDINVDKLFKEGPKGYDTWSFKQYIYALEQEDYCDFEVQFEIAHNAIHAWVGGTEEYSMGHLHYASYDPVFILHHSNTDRLFALWQELQKFRGHDPNEVNCALEMMREPLKPFSFGAPYNLNPTTKEHSKPEDTFDYKGHFHYEYDHLELQGMNVQRLHDYINQQKERDRVFAGFLLEGIGTSAHLDFSICKIDGECTHAGYFDVLGGSLETPWQFDRLYKYEITDVLESKGLDVHDVFDIKITQTSWDNEDISTDRFPPPSVIYVPK 413
               SCOP domains d1lnla1 A:-3-304 Mollusc hemocyanin                                                                                                                                                                                                                                                                                d1lnla2 A:305-405 C-terminal domain of mollusc hemocyanin                                             SCOP domains
               CATH domains 1lnlA01 A:-3-304 Di-copper center containing domain from catechol oxidase                                                                                                                                                                                                                                          1lnlA02 A:305-405  [code=2.60.310.10, no name defined]                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eee.hhhhhhhhhhhhhhhhhhhhh........hhhhh.........................hhhhhhhhhhhhhhhhhhhh..................hhhhhh.............hhhhh............................hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...................hhhhh.....hhhhhh..hhhhhhhhhhhh.eee........hhhhhhhhhhhhh...eeeeee........eeeeeeee.....eeeeeeeee..............eeeehhhhhhh.........eeeeeeee......hhhhh......ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------TYROSINASE_1      ------------------------------------------------------------------------------------------------------------------------------TYROSINASE_2--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1lnl A  -3 GHRNLVRKSVRNLSPAERASLVAALKSLQEDSSADGFQSLASFHAQPPLCPAPAANKAFACCVHGMATFPEWHRLYTVQFEDALRRHGSVVGIPYWDTVVPQEDLPAFFNDEIWDDALFHANFTNPFNGADIDFNHQKIARDINVDKLAKEGPKGYDTWSFKQYIYALEQEDYCDFEVQFEIAHNAIHAWVGGTEEYSMGHLHYASYDPVFILHHSNTDRLFALWQELQKFRGHDPNEVNCALEMMREPLKPFSFGAPYNLNPTTKEHSKPEDTFDYKGHFHYEYDHLELQGMNVQRLHDYINQQKEADRVFAGFLLEGIGTSAHLDFSICAIDGECTHAGYFDVLGGSLETPWQFDRLYKYEITDVLESKGLDVHDVFDIKITQTSWDNEDISTDRFPPPSVIYVPK 405
                              ||     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397        
                             -1|                                                                                                                                                                                                                                                                                                                                                                                                                    
                               1                                                                                                                                                                                                                                                                                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:408
 aligned with HCY2E_RAPVE | P83040 from UniProtKB/Swiss-Prot  Length:413

    Alignment length:408
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405        
          HCY2E_RAPVE     6 THRNLVRKSVRNLSPAERRSLVHALKSLQEDSSADGFQSLASFHAQPPLCPYPEANKRFACCVHGMATFPEWHRLYTVQFEDALRRHGSVVGIPYWDTVVPQEDLPAFFNDEIWDDPLFHANFTNPFNGADIDFNHQKIARDINVDKLFKEGPKGYDTWSFKQYIYALEQEDYCDFEVQFEIAHNAIHAWVGGTEEYSMGHLHYASYDPVFILHHSNTDRLFALWQELQKFRGHDPNEVNCALEMMREPLKPFSFGAPYNLNPTTKEHSKPEDTFDYKGHFHYEYDHLELQGMNVQRLHDYINQQKERDRVFAGFLLEGIGTSAHLDFSICKIDGECTHAGYFDVLGGSLETPWQFDRLYKYEITDVLESKGLDVHDVFDIKITQTSWDNEDISTDRFPPPSVIYVPK 413
               SCOP domains d1lnlb1 B:-3-304 Mollusc hemocyanin                                                                                                                                                                                                                                                                                d1lnlb2 B:305-405 C-terminal domain of mollusc hemocyanin                                             SCOP domains
               CATH domains 1lnlB01 B:-3-304 Di-copper center containing domain from catechol oxidase                                                                                                                                                                                                                                          1lnlB02 B:305-405  [code=2.60.310.10, no name defined]                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeee....hhhhhhhhhhhhhhhh......hhhhhh..........................hhhhhhhhhhhhhhhhhhhh....eeee..........hhhhhh.eee......eee.hhhh.ee....ee......hhhhh........hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............................hhhhhhh.hhhhhhhhhhhh..ee...hhhhhhhhhhhhhhhh.....eeeeee........eeeee............eee................eeeehhhhhhh............eeeee....ee........eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------TYROSINASE_1      ------------------------------------------------------------------------------------------------------------------------------TYROSINASE_2--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1lnl B  -3 GHRNLVRKSVRNLSPAERASLVAALKSLQEDSSADGFQSLASFHAQPPLCPAPAANKAFACCVHGMATFPEWHRLYTVQFEDALRRHGSVVGIPYWDTVVPQEDLPAFFNDEIWDDALFHANFTNPFNGADIDFNHQKIARDINVDKLAKEGPKGYDTWSFKQYIYALEQEDYCDFEVQFEIAHNAIHAWVGGTEEYSMGHLHYASYDPVFILHHSNTDRLFALWQELQKFRGHDPNEVNCALEMMREPLKPFSFGAPYNLNPTTKEHSKPEDTFDYKGHFHYEYDHLELQGMNVQRLHDYINQQKEADRVFAGFLLEGIGTSAHLDFSICAIDGECTHAGYFDVLGGSLETPWQFDRLYKYEITDVLESKGLDVHDVFDIKITQTSWDNEDISTDRFPPPSVIYVPK 405
                              ||     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397        
                             -1|                                                                                                                                                                                                                                                                                                                                                                                                                    
                               1                                                                                                                                                                                                                                                                                                                                                                                                                    


Chain C from PDB  Type:PROTEIN  Length:408
 aligned with HCY2E_RAPVE | P83040 from UniProtKB/Swiss-Prot  Length:413

    Alignment length:408
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405        
          HCY2E_RAPVE     6 THRNLVRKSVRNLSPAERRSLVHALKSLQEDSSADGFQSLASFHAQPPLCPYPEANKRFACCVHGMATFPEWHRLYTVQFEDALRRHGSVVGIPYWDTVVPQEDLPAFFNDEIWDDPLFHANFTNPFNGADIDFNHQKIARDINVDKLFKEGPKGYDTWSFKQYIYALEQEDYCDFEVQFEIAHNAIHAWVGGTEEYSMGHLHYASYDPVFILHHSNTDRLFALWQELQKFRGHDPNEVNCALEMMREPLKPFSFGAPYNLNPTTKEHSKPEDTFDYKGHFHYEYDHLELQGMNVQRLHDYINQQKERDRVFAGFLLEGIGTSAHLDFSICKIDGECTHAGYFDVLGGSLETPWQFDRLYKYEITDVLESKGLDVHDVFDIKITQTSWDNEDISTDRFPPPSVIYVPK 413
               SCOP domains d1lnlc1 C:-3-304 Mollusc hemocyanin                                                                                                                                                                                                                                                                                d1lnlc2 C:305-405 C-terminal domain of mollusc hemocyanin                                             SCOP domains
               CATH domains 1lnlC01 C:-3-304 Di-copper center containing domain from catechol oxidase                                                                                                                                                                                                                                          1lnlC02 C:305-405  [code=2.60.310.10, no name defined]                                                CATH domains
           Pfam domains (1) ---------------------------------Tyrosinase-1lnlC01 C:31-225                                                                                                                                                                        ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains (1)
           Pfam domains (2) ---------------------------------Tyrosinase-1lnlC02 C:31-225                                                                                                                                                                        ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains (2)
           Pfam domains (3) ---------------------------------Tyrosinase-1lnlC03 C:31-225                                                                                                                                                                        ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains (3)
         Sec.struct. author ....eeeee....hhhhhhhhhhhhhhhhh.....hhhhhhhhhh......................hhhhhhhhhhhhhhh.hhhhh...eeee..........hhhhhh..ee......ee.hhhhh.ee....ee...................hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............................hhhhhh.hhhhh.hhhhhh.eee........hhhhhhhhhhhhh...eeeee.........eeeeeeeee......eeeeeee..................hhhhhhhh.......eeeeeeeee..............eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------TYROSINASE_1      ------------------------------------------------------------------------------------------------------------------------------TYROSINASE_2--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1lnl C  -3 GHRNLVRKSVRNLSPAERASLVAALKSLQEDSSADGFQSLASFHAQPPLCPAPAANKAFACCVHGMATFPEWHRLYTVQFEDALRRHGSVVGIPYWDTVVPQEDLPAFFNDEIWDDALFHANFTNPFNGADIDFNHQKIARDINVDKLAKEGPKGYDTWSFKQYIYALEQEDYCDFEVQFEIAHNAIHAWVGGTEEYSMGHLHYASYDPVFILHHSNTDRLFALWQELQKFRGHDPNEVNCALEMMREPLKPFSFGAPYNLNPTTKEHSKPEDTFDYKGHFHYEYDHLELQGMNVQRLHDYINQQKEADRVFAGFLLEGIGTSAHLDFSICAIDGECTHAGYFDVLGGSLETPWQFDRLYKYEITDVLESKGLDVHDVFDIKITQTSWDNEDISTDRFPPPSVIYVPK 405
                              ||     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397        
                             -1|                                                                                                                                                                                                                                                                                                                                                                                                                    
                               1
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 6)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (2, 6)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 3)

Asymmetric Unit
(-)
Clan: Di-copper (13)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (HCY2E_RAPVE | P83040)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0005344    oxygen transporter activity    Enables the directed movement of oxygen into, out of or within a cell, or between cells.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0015671    oxygen transport    The directed movement of oxygen (O2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CU  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NAG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Ala A:254 - Pro A:255   [ RasMol ]  
    Ala B:254 - Pro B:255   [ RasMol ]  
    Ala C:254 - Pro C:255   [ RasMol ]  
    Gln A:43 - Pro A:44   [ RasMol ]  
    Gln B:43 - Pro B:44   [ RasMol ]  
    Gln C:43 - Pro C:44   [ RasMol ]  
    Lys A:248 - Pro A:249   [ RasMol ]  
    Lys B:248 - Pro B:249   [ RasMol ]  
    Lys C:248 - Pro C:249   [ RasMol ]  
 
Biological Unit
  Complete Structure
    Biological Unit 1  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1lnl
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  HCY2E_RAPVE | P83040
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  HCY2E_RAPVE | P83040
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 1LNL)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1LNL)