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(-) Description

Title :  THREE-DIMENSIONAL STRUCTURE OF THE IMMUNODOMINANT HEAT-SHOCK PROTEIN CHAPERONIN-10 OF MYCOBACTERIUM LEPRAE
 
Authors :  S. C. Mande, W. G. J. Hol
Date :  13 Dec 95  (Deposition) - 11 Jan 97  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.50
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G
Keywords :  Chaperone, Antigen, Heat Shock (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. C. Mande, V. Mehra, B. R. Bloom, W. G. Hol
Structure Of The Heat Shock Protein Chaperonin-10 Of Mycobacterium Leprae.
Science V. 271 203 1996
PubMed-ID: 8539620
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CHAPERONIN-10
    Chains: A, B, C, D, E, F, G
    Organism Scientific: MYCOBACTERIUM LEPRAE
    Organism Taxid: 1769
    Synonym: ML10

 Structural Features

(-) Chains, Units

  1234567
Asymmetric/Biological Unit : ABCDEFG

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1LEP)

(-) Sites  (0, 0)

(no "Site" information available for 1LEP)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1LEP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1LEP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1LEP)

(-) PROSITE Motifs  (1, 7)

Asymmetric/Biological Unit (1, 7)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CHAPERONINS_CPN10PS00681 Chaperonins cpn10 signature.CH10_MYCLE6-30
 
 
 
 
 
 		  7A:5-16
B:5-16
C:5-16
D:5-16
E:5-16
F:5-16
G:5-16

(-) Exons   (0, 0)

(no "Exon" information available for 1LEP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:81
 aligned with CH10_MYCLE | P24301 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:99
                                    11        21        31        41        51        61        71        81        91         
           CH10_MYCLE     2 AKVKIKPLEDKILVQAGEAETMTPSGLVIPENAKEKPQEGTVVAVGPGRWDEDGAKRIPVDVSEGDIVIYSKYGGTEIKYNGEEYLILSARDVLAVVSK 100
               SCOP domains d1lepa_ A: Chape                  ronin-10 (GroES)                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................------------------................................................................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----CHAPERONINS_CPN10        ---------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 1lep A   1 AKVKIKPLEDKILVQA------------------EKPQEGTVVAVGPGRWDEDGAKRIPVDVSEGDIVIYSKYGGTEIKYNGEEYLILSARDVLAVVSK  92
                                    10     |   -         -    |   33        43        53        63        73        83         
                                          16                 28                                                                


Chain B from PDB  Type:PROTEIN  Length:81
 aligned with CH10_MYCLE | P24301 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:99
                                    11        21        31        41        51        61        71        81        91         
           CH10_MYCLE     2 AKVKIKPLEDKILVQAGEAETMTPSGLVIPENAKEKPQEGTVVAVGPGRWDEDGAKRIPVDVSEGDIVIYSKYGGTEIKYNGEEYLILSARDVLAVVSK 100
               SCOP domains d1lepb_ B: Chape                  ronin-10 (GroES)                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................------------------................................................................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----CHAPERONINS_CPN10        ---------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 1lep B   1 AKVKIKPLEDKILVQA------------------EKPQEGTVVAVGPGRWDEDGAKRIPVDVSEGDIVIYSKYGGTEIKYNGEEYLILSARDVLAVVSK  92
                                    10     |   -         -    |   33        43        53        63        73        83         
                                          16                 28                                                                


Chain C from PDB  Type:PROTEIN  Length:81
 aligned with CH10_MYCLE | P24301 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:99
                                    11        21        31        41        51        61        71        81        91         
           CH10_MYCLE     2 AKVKIKPLEDKILVQAGEAETMTPSGLVIPENAKEKPQEGTVVAVGPGRWDEDGAKRIPVDVSEGDIVIYSKYGGTEIKYNGEEYLILSARDVLAVVSK 100
               SCOP domains d1lepc_ C: Chape                  ronin-10 (GroES)                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................------------------................................................................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----CHAPERONINS_CPN10        ---------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 1lep C   1 AKVKIKPLEDKILVQA------------------EKPQEGTVVAVGPGRWDEDGAKRIPVDVSEGDIVIYSKYGGTEIKYNGEEYLILSARDVLAVVSK  92
                                    10     |   -         -    |   33        43        53        63        73        83         
                                          16                 28                                                                


Chain D from PDB  Type:PROTEIN  Length:81
 aligned with CH10_MYCLE | P24301 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:99
                                    11        21        31        41        51        61        71        81        91         
           CH10_MYCLE     2 AKVKIKPLEDKILVQAGEAETMTPSGLVIPENAKEKPQEGTVVAVGPGRWDEDGAKRIPVDVSEGDIVIYSKYGGTEIKYNGEEYLILSARDVLAVVSK 100
               SCOP domains d1lepd_ D: Chape                  ronin-10 (GroES)                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................------------------................................................................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----CHAPERONINS_CPN10        ---------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 1lep D   1 AKVKIKPLEDKILVQA------------------EKPQEGTVVAVGPGRWDEDGAKRIPVDVSEGDIVIYSKYGGTEIKYNGEEYLILSARDVLAVVSK  92
                                    10     |   -         -    |   33        43        53        63        73        83         
                                          16                 28                                                                


Chain E from PDB  Type:PROTEIN  Length:81
 aligned with CH10_MYCLE | P24301 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:99
                                    11        21        31        41        51        61        71        81        91         
           CH10_MYCLE     2 AKVKIKPLEDKILVQAGEAETMTPSGLVIPENAKEKPQEGTVVAVGPGRWDEDGAKRIPVDVSEGDIVIYSKYGGTEIKYNGEEYLILSARDVLAVVSK 100
               SCOP domains d1lepe_ E: Chape                  ronin-10 (GroES)                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................------------------................................................................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----CHAPERONINS_CPN10        ---------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 1lep E   1 AKVKIKPLEDKILVQA------------------EKPQEGTVVAVGPGRWDEDGAKRIPVDVSEGDIVIYSKYGGTEIKYNGEEYLILSARDVLAVVSK  92
                                    10     |   -         -    |   33        43        53        63        73        83         
                                          16                 28                                                                


Chain F from PDB  Type:PROTEIN  Length:81
 aligned with CH10_MYCLE | P24301 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:99
                                    11        21        31        41        51        61        71        81        91         
           CH10_MYCLE     2 AKVKIKPLEDKILVQAGEAETMTPSGLVIPENAKEKPQEGTVVAVGPGRWDEDGAKRIPVDVSEGDIVIYSKYGGTEIKYNGEEYLILSARDVLAVVSK 100
               SCOP domains d1lepf_ F: Chape                  ronin-10 (GroES)                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................------------------................................................................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----CHAPERONINS_CPN10        ---------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 1lep F   1 AKVKIKPLEDKILVQA------------------EKPQEGTVVAVGPGRWDEDGAKRIPVDVSEGDIVIYSKYGGTEIKYNGEEYLILSARDVLAVVSK  92
                                    10     |   -         -    |   33        43        53        63        73        83         
                                          16                 28                                                                


Chain G from PDB  Type:PROTEIN  Length:81
 aligned with CH10_MYCLE | P24301 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:99
                                    11        21        31        41        51        61        71        81        91         
           CH10_MYCLE     2 AKVKIKPLEDKILVQAGEAETMTPSGLVIPENAKEKPQEGTVVAVGPGRWDEDGAKRIPVDVSEGDIVIYSKYGGTEIKYNGEEYLILSARDVLAVVSK 100
               SCOP domains d1lepg_ G: Chape                  ronin-10 (GroES)                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................------------------................................................................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----CHAPERONINS_CPN10        ---------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 1lep G   1 AKVKIKPLEDKILVQA------------------EKPQEGTVVAVGPGRWDEDGAKRIPVDVSEGDIVIYSKYGGTEIKYNGEEYLILSARDVLAVVSK  92
                                    10     |   -         -    |   33        43        53        63        73        83         
                                          16                 28
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 7)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1LEP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1LEP)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G   (CH10_MYCLE | P24301)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
biological process
    GO:0006457    protein folding    The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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