1LAR - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE TANDEM PHOSPHATASE DOMAINS OF RPTP LAR

Authors :   H. -J. Nam, F. Poy, N. Krueger, H. Saito, C. A. Frederick

Date :   20 Apr 99 (Deposition) - 25 Apr 00 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Tyrosine Phosphatease, Lar Protein, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. J. Nam, F. Poy, N. X. Krueger, H. Saito, C. A. Frederick
Crystal Structure Of The Tandem Phosphatase Domains Of Rptp Lar.
Cell(Cambridge, Mass. ) V. 97 449 1999
PubMed-ID: 10338209 | Reference-DOI: 10.1016/S0092-8674(00)80755-2
(for further references see the PDB file header)

Molecule 1 - PROTEIN (LAR)
	Chains	:	A, B
	EC Number	:	3.1.3.48
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Strain	:	BL21
	Expression System Taxid	:	469008
	Expression System Variant	:	DE3
	Fragment	:	PHOSPHATASE
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1LAR)

(no "Site" information available for 1LAR)

(no "SS Bond" information available for 1LAR)

(no "Cis Peptide Bond" information available for 1LAR)

(no "SAP(SNP)/Variant" information available for 1LAR)

Asymmetric Unit (3, 11)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TYR_PHOSPHATASE_PTP	PS50055	PTP type protein phosphatase family profile.	PTPRF_HUMAN	1352-1607 1639-1898	3	A:1326-1581 A:1613-1872 B:1613-1872
2	TYR_PHOSPHATASE_2	PS50056	Tyrosine specific protein phosphatases family profile.	PTPRF_HUMAN	1527-1598 1816-1889	4	A:1501-1572 B:1501-1572 A:1790-1863 B:1790-1863
3	TYR_PHOSPHATASE_1	PS00383	Tyrosine specific protein phosphatases active site.	PTPRF_HUMAN	1546-1556 1837-1847	4	A:1520-1530 B:1520-1530 A:1811-1821 B:1811-1821

Biological Unit 1 (3, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TYR_PHOSPHATASE_PTP	PS50055	PTP type protein phosphatase family profile.	PTPRF_HUMAN	1352-1607 1639-1898	2	A:1326-1581 A:1613-1872 -
2	TYR_PHOSPHATASE_2	PS50056	Tyrosine specific protein phosphatases family profile.	PTPRF_HUMAN	1527-1598 1816-1889	2	A:1501-1572 - A:1790-1863 -
3	TYR_PHOSPHATASE_1	PS00383	Tyrosine specific protein phosphatases active site.	PTPRF_HUMAN	1546-1556 1837-1847	2	A:1520-1530 - A:1811-1821 -

Biological Unit 2 (3, 5)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TYR_PHOSPHATASE_PTP	PS50055	PTP type protein phosphatase family profile.	PTPRF_HUMAN	1352-1607 1639-1898	1	- - B:1613-1872
2	TYR_PHOSPHATASE_2	PS50056	Tyrosine specific protein phosphatases family profile.	PTPRF_HUMAN	1527-1598 1816-1889	2	- B:1501-1572 - B:1790-1863
3	TYR_PHOSPHATASE_1	PS00383	Tyrosine specific protein phosphatases active site.	PTPRF_HUMAN	1546-1556 1837-1847	2	- B:1520-1530 - B:1811-1821

Asymmetric Unit (12, 23)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.3a	ENST00000359947	3a	ENSE00001268253	chr1:43996547-43996761	215	PTPRF_HUMAN	-	0	0	-	-
1.4	ENST00000359947	4	ENSE00001369939	chr1:44003869-44003948	80	PTPRF_HUMAN	-	0	0	-	-
1.5b	ENST00000359947	5b	ENSE00002190863	chr1:44010702-44010837	136	PTPRF_HUMAN	1-31	31	0	-	-
1.6c	ENST00000359947	6c	ENSE00001612970	chr1:44019163-44019308	146	PTPRF_HUMAN	31-79	49	0	-	-
1.7	ENST00000359947	7	ENSE00001771120	chr1:44019471-44019612	142	PTPRF_HUMAN	80-127	48	0	-	-
1.8	ENST00000359947	8	ENSE00001723929	chr1:44035261-44035449	189	PTPRF_HUMAN	127-190	64	0	-	-
1.10a	ENST00000359947	10a	ENSE00001705341	chr1:44044481-44044591	111	PTPRF_HUMAN	190-227	38	0	-	-
1.13	ENST00000359947	13	ENSE00001706696	chr1:44054402-44054671	270	PTPRF_HUMAN	227-317	91	0	-	-
1.14b	ENST00000359947	14b	ENSE00001714914	chr1:44056643-44057224	582	PTPRF_HUMAN	317-511	195	0	-	-
1.15	ENST00000359947	15	ENSE00001636757	chr1:44057483-44057619	137	PTPRF_HUMAN	511-556	46	0	-	-
1.16	ENST00000359947	16	ENSE00000957339	chr1:44058128-44058272	145	PTPRF_HUMAN	557-605	49	0	-	-
1.17	ENST00000359947	17	ENSE00000957341	chr1:44063419-44063724	306	PTPRF_HUMAN	605-707	103	0	-	-
1.18b	ENST00000359947	18b	ENSE00000957342	chr1:44064391-44064584	194	PTPRF_HUMAN	707-771	65	0	-	-
1.19	ENST00000359947	19	ENSE00000957343	chr1:44067742-44067768	27	PTPRF_HUMAN	772-780	9	0	-	-
1.20b	ENST00000359947	20b	ENSE00000957344	chr1:44069087-44069204	118	PTPRF_HUMAN	781-820	40	0	-	-
1.21	ENST00000359947	21	ENSE00000957345	chr1:44069282-44069860	579	PTPRF_HUMAN	820-1013	194	0	-	-
1.22	ENST00000359947	22	ENSE00000957346	chr1:44070574-44070671	98	PTPRF_HUMAN	1013-1045	33	0	-	-
1.23	ENST00000359947	23	ENSE00000957347	chr1:44070861-44071114	254	PTPRF_HUMAN	1046-1130	85	0	-	-
1.24a	ENST00000359947	24a	ENSE00000957348	chr1:44071200-44071293	94	PTPRF_HUMAN	1130-1161	32	0	-	-
1.25	ENST00000359947	25	ENSE00000957349	chr1:44071911-44072129	219	PTPRF_HUMAN	1162-1234	73	0	-	-
1.26a	ENST00000359947	26a	ENSE00000957350	chr1:44072485-44072639	155	PTPRF_HUMAN	1235-1286	52	0	-	-
1.27	ENST00000359947	27	ENSE00000957351	chr1:44075054-44075169	116	PTPRF_HUMAN	1286-1325	40	0	-	-
1.29b	ENST00000359947	29b	ENSE00001720928	chr1:44079289-44079386	98	PTPRF_HUMAN	1325-1357	33	1	A:1307-1331 -	25 -
1.30	ENST00000359947	30	ENSE00000957369	chr1:44083116-44083239	124	PTPRF_HUMAN	1358-1399	42	2	A:1332-1373 B:1340-1373	42 34
1.31	ENST00000359947	31	ENSE00001680656	chr1:44083407-44083582	176	PTPRF_HUMAN	1399-1457	59	2	A:1373-1431 B:1373-1431	59 59
1.32	ENST00000359947	32	ENSE00000957355	chr1:44084301-44084420	120	PTPRF_HUMAN	1458-1497	40	2	A:1432-1471 B:1432-1471	40 40
1.33	ENST00000359947	33	ENSE00001638469	chr1:44084719-44084873	155	PTPRF_HUMAN	1498-1549	52	2	A:1472-1523 B:1472-1523	52 52
1.34	ENST00000359947	34	ENSE00000957357	chr1:44084959-44085244	286	PTPRF_HUMAN	1549-1644	96	2	A:1523-1618 B:1523-1618	96 96
1.35	ENST00000359947	35	ENSE00000957358	chr1:44085351-44085529	179	PTPRF_HUMAN	1645-1704	60	2	A:1619-1678 (gaps) B:1619-1678 (gaps)	60 60
1.36a	ENST00000359947	36a	ENSE00000957359	chr1:44085766-44085892	127	PTPRF_HUMAN	1704-1746	43	2	A:1678-1720 B:1678-1720	43 43
1.36c	ENST00000359947	36c	ENSE00001684377	chr1:44086125-44086250	126	PTPRF_HUMAN	1747-1788	42	2	A:1721-1762 B:1721-1762	42 42
1.37	ENST00000359947	37	ENSE00001754814	chr1:44086509-44086663	155	PTPRF_HUMAN	1789-1840	52	2	A:1763-1814 B:1763-1814	52 52
1.38	ENST00000359947	38	ENSE00001664652	chr1:44086768-44086903	136	PTPRF_HUMAN	1840-1885	46	2	A:1814-1859 B:1814-1859	46 46
1.39f	ENST00000359947	39f	ENSE00001775546	chr1:44087606-44089337	1732	PTPRF_HUMAN	1886-1907	22	2	A:1860-1876 B:1860-1876	17 17

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:566
 aligned with PTPRF_HUMAN | P10586 from UniProtKB/Swiss-Prot  Length:1907

    Alignment length:570
                                  1342      1352      1362      1372      1382      1392      1402      1412      1422      1432      1442      1452      1462      1472      1482      1492      1502      1512      1522      1532      1542      1552      1562      1572      1582      1592      1602      1612      1622      1632      1642      1652      1662      1672      1682      1692      1702      1712      1722      1732      1742      1752      1762      1772      1782      1792      1802      1812      1822      1832      1842      1852      1862      1872      1882      1892      1902
         PTPRF_HUMAN   1333 PITDLADNIERLKANDGLKFSQEYESIDPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHKSGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAATCGHTEVPARNLYAHIQKLGQVPPGESVTAMELEFKLLASSKAHTSRFISANLPCNKFKNRLVNIMPYELTRVCLQPIRGVEGSDYINASFLDGYRQQKAYIATQGPLAESTEDFWRMLWEHNSTIIVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGSF 1902
               SCOP domains d1lara1 A:1307-1623 RPTP Lar                                                                                                                                                                                                                                                                                                 ----d1lara2 A:1628-1876 RPTP Lar                                                                                                                                                                                                                              SCOP domains
               CATH domains 1larA01 A:1307-1586 Protein tyrosine phosphatase superfamily                                                                                                                                                                                                                            1larA02 A:1587-1875 Protein tyrosine     phosphatase superfamily                                                                                                                                                                                                                                 - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhh.....hhhhhhhhh.........hhhh.hhhhhh.............................eeee........eeee.......hhhhhhhhhh....eeee....................eeee..eeeeeeeeee...eeeeeeeeee.....eeeeeeeee............hhhhhhhhhhhhh.......eeee......hhhhhhhhhhhhhhhhh.....hhhhhhhhh.........hhhhhhhhhhhhhhhhh......hhhhhhhhhhhh.........hhhhhhhhhh..----........hhhhhh.............................eeee........eeee....hhhhhhhhhhhhh....eeee.....................eee..eeeeeeeeee...eeeeeeeeee....eeeeeeeeee............hhhhhhhhhhhhhhhh......eeee......hhhhhhhhhhhhhhhhhh....hhhhhhhhhh........hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) -------------------TYR_PHOSPHATASE_PTP  PDB: A:1326-1581 UniProt: 1352-1607                                                                                                                                                                                                        -------------------------------TYR_PHOSPHATASE_PTP  PDB: A:1613-1872 UniProt: 1639-1898                                                                                                                                                                                                            ---- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TYR_PHOSPHATASE_2  PDB: A:1501-1572 UniProt: 1527-1598                  -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TYR_PHOSPHATASE_2  PDB: A:1790-1863 UniProt: 1816-1889                    ------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TYR_PHOSPHA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TYR_PHOSPHA------------------------------------------------------- PROSITE (3)
           Transcript 1 (1) Exon 1.29b [INCOMPLETE]  Exon 1.30  PDB: A:1332-1373               ----------------------------------------------------------Exon 1.32  PDB: A:1432-1471             Exon 1.33  PDB: A:1472-1523 UniProt: 1498-1549      -----------------------------------------------------------------------------------------------Exon 1.35  PDB: A:1619-1678 (gaps) UniProt: 1645-1704       ------------------------------------------Exon 1.36c  PDB: A:1721-1762              Exon 1.37  PDB: A:1763-1814 UniProt: 1789-1840      ---------------------------------------------Exon 1.39f        Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------Exon 1.31  PDB: A:1373-1431 UniProt: 1399-1457             -------------------------------------------------------------------------------------------Exon 1.34  PDB: A:1523-1618 UniProt: 1549-1644                                                  -----------------------------------------------------------Exon 1.36a  PDB: A:1678-1720               ---------------------------------------------------------------------------------------------Exon 1.38  PDB: A:1814-1859 UniProt: 1840-1885----------------- Transcript 1 (2)
                1lar A 1307 MITDLADNIERLKANDGLKFSQEYESIDPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHKSGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAATCGHTEVPARNLYAHIQKLGQVPPGESVTAMELEFKLLASS----SRFISANLPCNKFKNRLVNIMPYELTRVCLQPIRGVEGSDYINASFLDGYRQQKAYIATQGPLAESTEDFWRMLWEHNSTIIVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGSF 1876
                                  1316      1326      1336      1346      1356      1366      1376      1386      1396      1406      1416      1426      1436      1446      1456      1466      1476      1486      1496      1506      1516      1526      1536      1546      1556      1566      1576      1586      1596      1606      1616      |  - |    1636      1646      1656      1666      1676      1686      1696      1706      1716      1726      1736      1746      1756      1766      1776      1786      1796      1806      1816      1826      1836      1846      1856      1866      1876
                                                                                                                                                                                                                                                                                                                                                     1623 1628

Chain B from PDB  Type:PROTEIN  Length:533
 aligned with PTPRF_HUMAN | P10586 from UniProtKB/Swiss-Prot  Length:1907

    Alignment length:537
                                  1375      1385      1395      1405      1415      1425      1435      1445      1455      1465      1475      1485      1495      1505      1515      1525      1535      1545      1555      1565      1575      1585      1595      1605      1615      1625      1635      1645      1655      1665      1675      1685      1695      1705      1715      1725      1735      1745      1755      1765      1775      1785      1795      1805      1815      1825      1835      1845      1855      1865      1875      1885      1895       
         PTPRF_HUMAN   1366 TWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHKSGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAATCGHTEVPARNLYAHIQKLGQVPPGESVTAMELEFKLLASSKAHTSRFISANLPCNKFKNRLVNIMPYELTRVCLQPIRGVEGSDYINASFLDGYRQQKAYIATQGPLAESTEDFWRMLWEHNSTIIVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGSF 1902
               SCOP domains d1larb1 B:1340-1623 RPTP Lar                                                                                                                                                                                                                                                                ----d1larb2 B:1628-1876 RPTP Lar                                                                                                                                                                                                                              SCOP domains
               CATH domains 1larB01 B:1340-1586 Protein tyrosine phosphatase superfamily                                                                                                                                                                                           1larB02 B:1587-1875 Protein tyrosine     phosphatase superfamily                                                                                                                                                                                                                                 - CATH domains
           Pfam domains (1) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y_phosphatase-1larB01 B:1638-1871                                                                                                                                                                                                         ----- Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y_phosphatase-1larB02 B:1638-1871                                                                                                                                                                                                         ----- Pfam domains (2)
           Pfam domains (3) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y_phosphatase-1larB03 B:1638-1871                                                                                                                                                                                                         ----- Pfam domains (3)
           Pfam domains (4) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y_phosphatase-1larB04 B:1638-1871                                                                                                                                                                                                         ----- Pfam domains (4)
         Sec.struct. author ..hhhh....hhh.............................eeee........eeee.......hhhhhhhhhh....eeee....................eeee..eeeeeeeeee...eeeeeeeeee.....eeeeeeeee............hhhhhhhhhhhhh.......eeee......hhhhhhhhhhhhhhhhhh....hhhhhhhhhhh.......hhhhhhhhhhhhhhhhh.........hhhhhhhhh.........hhhhhhhhhh..----...hhhh.hhhhhh.............................eeee........eeee....hhhhhhhhhhhhh....eeee.....................eee..eeeeeeeeee...eeeeeeeeee....eeeeeeeeee............hhhhhhhhhhhhhhhh......eeee......hhhhhhhhhhhhhhhhhh....hhhhhhhhhh........hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) TYR_PHOSPHATASE_PTP  PDB: - UniProt: 1352-1607                                                                                                                                                                                                    -------------------------------TYR_PHOSPHATASE_PTP  PDB: B:1613-1872 UniProt: 1639-1898                                                                                                                                                                                                            ---- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------TYR_PHOSPHATASE_2  PDB: B:1501-1572 UniProt: 1527-1598                  -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TYR_PHOSPHATASE_2  PDB: B:1790-1863 UniProt: 1816-1889                    ------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TYR_PHOSPHA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TYR_PHOSPHA------------------------------------------------------- PROSITE (3)
           Transcript 1 (1) Exon 1.30  PDB: B:1340-1373       ----------------------------------------------------------Exon 1.32  PDB: B:1432-1471             Exon 1.33  PDB: B:1472-1523 UniProt: 1498-1549      -----------------------------------------------------------------------------------------------Exon 1.35  PDB: B:1619-1678 (gaps) UniProt: 1645-1704       ------------------------------------------Exon 1.36c  PDB: B:1721-1762              Exon 1.37  PDB: B:1763-1814 UniProt: 1789-1840      ---------------------------------------------Exon 1.39f        Transcript 1 (1)
           Transcript 1 (2) ---------------------------------Exon 1.31  PDB: B:1373-1431 UniProt: 1399-1457             -------------------------------------------------------------------------------------------Exon 1.34  PDB: B:1523-1618 UniProt: 1549-1644                                                  -----------------------------------------------------------Exon 1.36a  PDB: B:1678-1720               ---------------------------------------------------------------------------------------------Exon 1.38  PDB: B:1814-1859 UniProt: 1840-1885----------------- Transcript 1 (2)
                1lar B 1340 TWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHKSGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAATCGHTEVPARNLYAHIQKLGQVPPGESVTAMELEFKLLASS----SRFISANLPCNKFKNRLVNIMPYELTRVCLQPIRGVEGSDYINASFLDGYRQQKAYIATQGPLAESTEDFWRMLWEHNSTIIVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGSF 1876
                                  1349      1359      1369      1379      1389      1399      1409      1419      1429      1439      1449      1459      1469      1479      1489      1499      1509      1519      1529      1539      1549      1559      1569      1579      1589      1599      1609      1619   |  1629      1639      1649      1659      1669      1679      1689      1699      1709      1719      1729      1739      1749      1759      1769      1779      1789      1799      1809      1819      1829      1839      1849      1859      1869       
                                                                                                                                                                                                                                                                                                                    1623 1628

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: (Phosphotyrosine protein) phosphatases II (296)

Superfamily: (Phosphotyrosine protein) phosphatases II (296)

Family: Higher-molecular-weight phosphotyrosine protein phosphatases (166)

Protein domain: RPTP Lar (1)

Human (Homo sapiens) [TaxId: 9606] (1)

1a	d1lara1	A:1307-1623
1b	d1lara2	A:1628-1876
1c	d1larb1	B:1340-1623
1d	d1larb2	B:1628-1876

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Complex (3881)

Topology: Protein-Tyrosine Phosphatase; Chain A (262)

Homologous Superfamily: Protein tyrosine phosphatase superfamily (228)

Human (Homo sapiens) (196)

1a	1larB01	B:1340-1586
1b	1larA01	A:1307-1586
1c	1larA02	A:1587-1875
1d	1larB02	B:1587-1875

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Phosphatase (121)

Family: Y_phosphatase (93)

Homo sapiens (Human) (82)

1a	Y_phosphatase-1larB01	B:1638-1871
1b	Y_phosphatase-1larB02	B:1638-1871
1c	Y_phosphatase-1larB03	B:1638-1871
1d	Y_phosphatase-1larB04	B:1638-1871

Asymmetric Unit(hide GO term definitions)

Chain A,B (PTPRF_HUMAN | P10586)

molecular function
	GO:0035373	chondroitin sulfate proteoglycan binding	Interacting selectively and non-covalently with a chondroitin sulfate proteoglycan, any proteoglycan containing chondroitin sulfate as the glycosaminoglycan carbohydrate unit.
	GO:0008201	heparin binding	Interacting selectively and non-covalently with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016791	phosphatase activity	Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate.
	GO:0004721	phosphoprotein phosphatase activity	Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity.
	GO:0032403	protein complex binding	Interacting selectively and non-covalently with any protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0004725	protein tyrosine phosphatase activity	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
	GO:0005001	transmembrane receptor protein tyrosine phosphatase activity	Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
biological process
	GO:0007155	cell adhesion	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
	GO:0016477	cell migration	The controlled self-propelled movement of a cell from one site to a destination guided by molecular cues. Cell migration is a central process in the development and maintenance of multicellular organisms.
	GO:0007268	chemical synaptic transmission	The vesicular release of classical neurotransmitter molecules from a presynapse, across a chemical synapse, the subsequent activation of neurotransmitter receptors at the postsynapse of a target cell (neuron, muscle, or secretory cell) and the effects of this activation on the postsynaptic membrane potential and ionic composition of the postsynaptic cytosol. This process encompasses both spontaneous and evoked release of neurotransmitter and all parts of synaptic vesicle exocytosis. Evoked transmission starts with the arrival of an action potential at the presynapse.
	GO:0016311	dephosphorylation	The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
	GO:1900121	negative regulation of receptor binding	Any process that stops, prevents or reduces the frequency, rate or extent of a protein or other molecule binding to a receptor.
	GO:0031102	neuron projection regeneration	The regrowth of neuronal processes such as axons or dendrites in response to their loss or damage.
	GO:0035335	peptidyl-tyrosine dephosphorylation	The removal of phosphoric residues from peptidyl-O-phospho-tyrosine to form peptidyl-tyrosine.
	GO:0006470	protein dephosphorylation	The process of removing one or more phosphoric residues from a protein.
	GO:0048679	regulation of axon regeneration	Any process that modulates the frequency, rate or extent of axon regeneration.
	GO:0010975	regulation of neuron projection development	Any process that modulates the rate, frequency or extent of neuron projection development. Neuron projection development is the process whose specific outcome is the progression of a neuron projection over time, from its formation to the mature structure. A neuron projection is any process extending from a neural cell, such as axons or dendrites (collectively called neurites).
	GO:0007185	transmembrane receptor protein tyrosine phosphatase signaling pathway	A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses protein tyrosine phosphatase activity, and ending with regulation of a downstream cellular process, e.g. transcription.
cellular component
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0005887	integral component of plasma membrane	The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0043005	neuron projection	A prolongation or process extending from a nerve cell, e.g. an axon or dendrite.
	GO:0043025	neuronal cell body	The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric Unit
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	1lar
		Family and Domain Information	:	ProDom \| SYSTERS
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	PTPRF_HUMAN \| P10586
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	3.1.3.48
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	PTPRF_HUMAN \| P10586
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UniProtKB/Swiss-Prot
	PTPRF_HUMAN \| P10586	:	2dju 2dn7 2edx 2edy 2yd5 2yd8 4n5u

(no "Related Entries Specified in the PDB File" available for 1LAR)

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