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(-) Description

Title :  SOLUTION STRUCTURE OF THE DNA 13-MER HAIRPIN CGCGGTXTCCGCG (X=PDG) CONTAINING THE 1,N2-PROPANODEOXYGUANOSINE ADDUCT AT THE SEVENTH POSITION
 
Authors :  J. P. Weisenseel, G. R. Reddy, L. J. Marnett, M. P. Stone
Date :  28 Mar 02  (Deposition) - 17 Apr 02  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A
Keywords :  Dna, Hairpin, Nmr, Propanpodeoxyguanosine (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. P. Weisenseel, G. R. Reddy, L. J. Marnett, M. P. Stone
Structure Of The 1, N(2)-Propanodeoxyguanosine Adduct In A Three-Base Dna Hairpin Loop Derived From A Palindrome In The Salmonella Typhimurium Hisd3052 Gene.
Chem. Res. Toxicol. V. 15 140 2002
PubMed-ID: 11849039  |  Reference-DOI: 10.1021/TX010107F
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*CP*GP*CP*GP*GP*TP*(P)P*TP*CP*CP*GP*CP*G)- 3'
    ChainsA
    EngineeredYES
    Other DetailsTHIS SYNTHETIC DNA SEQUENCE WAS DERIVED FROM THE HISD3052 GENE OF SALMONELLA TYPHIMURIUM.
    SyntheticYES

 Structural Features

(-) Chains, Units

  
NMR Structure 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1P1Mod. Residue2'-DEOXY-N1,N2-PROPANO GUANOSINE MONOPHOSPHATE

(-) Sites  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
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Chain A from PDB  Type:DNA  Length:13
                                            
                  1lae A  1 CGCGGTgTCCGCG 13
                                  | 10   
                                  7-P    

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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NMR Structure(hide GO term definitions)
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 Related Entries

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(-) Related Entries Specified in the PDB File

1la8 1LA8 IS THE SOLUTION STRUCTURE OF THE DNA 13-MER HAIRPIN CGCGGTGTCCGCG.
1lai 1LAI IS THE SOLUTION STRUCTURE OF THE B-DNA DUPLEX CGCGGTGTCCGCG.
1laq 1LAQ IS THE SOLUTION STRUCTURE OF THE B-DNA DUPLEX CGCGGTXTCCGCG (X=PDG) CONTAINING THE 1,N2- PROPANOGEOXYGUANOSINE ADDUCT WITH THE DEOXYRIBOSE AT C20 OPPOSITE PDG IN THE C2' ENDO CONFORMATION.
1las 1LAS IS THE SOLUTION STRUCTURE OF THE B-DNA DUPLEX CGCGGTXTCCGCG (X=PDG) CONTAINING THE 1,N2- PROPANOGEOXYGUANOSINE ADDUCT WITH THE DEOXYRIBOSE AT C20 OPPOSITE PDG IN THE C3' ENDO CONFORMATION.