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(-) Description

Title :  GRO-EL FRAGMENT (APICAL DOMAIN) COMPRISING RESIDUES 188-379
 
Authors :  A. E. Ashcroft, A. Brinker, J. E. Coyle, F. Weber, M. Kaiser, L. Moroder, M. R. Parsons, J. Jager, U. F. Hartl, M. Hayer-Hartl, S. E. Radford
Date :  27 Mar 02  (Deposition) - 03 Apr 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.06
Chains :  Asym./Biol. Unit :  A
Keywords :  Molecular Chaperone, Protein Folding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. E. Ashcroft, A. Brinker, J. E. Coyle, F. Weber, M. Kaiser, L. Moroder, M. R. Parsons, J. Jager, U. F. Hartl, M. Hayer-Hartl, S. E. Radford
Structural Plasticity And Noncovalent Substrate Binding In The Groel Apical Domain. A Study Using Electrospay Ionization Mass Spectrometry And Fluorescence Binding Studies.
J. Biol. Chem. V. 277 33115 2002
PubMed-ID: 12065585  |  Reference-DOI: 10.1074/JBC.M203398200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GROEL
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentAPICAL DOMAIN
    Organism ScientificESCHERICHIA COLI
    Organism Taxid562
    SynonymCHAPERONE HSP60, PEPTIDE-DEPENDENT ATPASE, HEAT SHOCK PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1LA1)

(-) Sites  (0, 0)

(no "Site" information available for 1LA1)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1LA1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1LA1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1LA1)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 1LA1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:192
 aligned with CH60_ECOLI | P0A6F5 from UniProtKB/Swiss-Prot  Length:548

    Alignment length:192
                                   197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377  
           CH60_ECOLI   188 DVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVI 379
               SCOP domains d1la1a_ A: GroEL, A domain                                                                                                                                                                       SCOP domains
               CATH domains 1la1A00 A:188-379 GroEL                                                                                                                                                                          CATH domains
               Pfam domains Cpn60_TCP1-1la1A01 A:188-379                                                                                                                                                                     Pfam domains
         Sec.struct. author .....eee.....hhhhh.......eeee..eeeeeeeee.hhhhhhhhhhhhhhhh..eeeeeeeehhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhhhhhhh....hhhhh.hhhhhhhhhheeeeeeee....eeeeee..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1la1 A 188 DVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVI 379
                                   197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit

(-) Gene Ontology  (18, 18)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (CH60_ECOLI | P0A6F5)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0051082    unfolded protein binding    Interacting selectively and non-covalently with an unfolded protein.
biological process
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
    GO:0051085    chaperone mediated protein folding requiring cofactor    The process of assisting in the correct posttranslational noncovalent assembly of proteins, which is dependent on additional protein cofactors. This process occurs over one or several cycles of nucleotide hydrolysis-dependent binding and release.
    GO:0006457    protein folding    The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
    GO:0042026    protein refolding    The process carried out by a cell that restores the biological activity of an unfolded or misfolded protein, using helper proteins such as chaperones.
    GO:0009408    response to heat    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
    GO:0019068    virion assembly    A late phase of the viral life cycle during which all the components necessary for the formation of a mature virion collect at a particular site in the cell and the basic structure of the virus particle is formed.
cellular component
    GO:1990220    GroEL-GroES complex    Bacterial chaperonin complex consisting of a heptameric 10kDa chaperonin subunit GroES and a tetradecameric (2x7) 60kDa chaperonin subunit GroEL. The 60kDa subunit possesses ATPase activity while the holo-enzyme is responsible for the correct folding of proteins.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CH60_ECOLI | P0A6F51aon 1dk7 1dkd 1fy9 1fya 1gr5 1grl 1gru 1jon 1kid 1kp8 1mnf 1oel 1pcq 1pf9 1ss8 1svt 1sx3 1sx4 1xck 2c7c 2c7d 2c7e 2cgt 2eu1 2nwc 2yey 3c9v 3cau 3vz6 3vz7 3vz8 3wvl 3zpz 3zq0 3zq1 4aaq 4aar 4aas 4aau 4ab2 4ab3 4v43 4wgl 4wsc

(-) Related Entries Specified in the PDB File

1dk7 DIFFERENT FRAGMENT OF SAME PROTEIN
1kid DIFFERENT FRAGMENT OF SAME PROTEIN