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(-) Description

Title :  THE SOLUTION STRUCTURE OF [D(CGC)R(AMAMAM)D(TTTGCG)]2
 
Authors :  Y. P. Tsao, L. Y. Wang, S. T. Hsu, M. L. Jain, S. H. Chou, W. C. Huang, J. W. Ch
Date :  28 Feb 02  (Deposition) - 03 Apr 02  (Release) - 13 Jul 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (10x)
NMR Structure *:  A,B  (1x)
Keywords :  Dna/Rna Hybrid, Chimeric Duplex, 2'O-Methyl, Dna-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. P. Tsao, L. Y. Wang, S. T. Hsu, M. L. Jain, S. H. Chou, C. Huang, J. W. Cheng
The Solution Structure Of [D(Cgc)R(Amamam)D(Tttgcg)]2.
J. Biomol. Nmr V. 21 209 2001
PubMed-ID: 11775738  |  Reference-DOI: 10.1023/A:1012924932513

(-) Compounds

Molecule 1 - 5'-D(*CP*GP*C)-R(P*(A39)P*(A39)P*(A39))- D(P*TP*TP*TP*GP*CP*G)-3'
    Chains: A, B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
NMR Structure (10x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

NMR Structure (1, 6)
No.NameCountTypeFull Name
1A2M6Mod. Nucleotide2'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPHATE)
NMR Structure * (1, 6)
No.NameCountTypeFull Name
1A2M6Mod. Nucleotide2'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPHATE)

(-) Sites  (0, 0)

(no "Site" information available for 1L3M)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1L3M)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1L3M)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1L3M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1L3M)

(-) Exons   (0, 0)

(no "Exon" information available for 1L3M)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:DNA/RNA  Length:12
                                           
                  1l3m A  1 CGCaaaTTTGCG 12
                               |||  10  
                               |||      
                               4-A2M    
                                5-A2M   
                                 6-A2M  


Chain B from PDB  Type:DNA/RNA  Length:12
                                           
                  1l3m B 13 CGCaaaTTTGCG 24
                               |||  22  
                              16-A2M    
                               17-A2M   
                                18-A2M
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1L3M)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1L3M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1L3M)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
    (no "Gene Ontology" information available for 1L3M)

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 Related Entries

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