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(-) Description

Title :  TUMOR ASSOCIATED MUCIN MOTIF FROM CD43 PROTEIN
 
Authors :  D. M. Coltart, L. J. Williams, P. W. Glunz, D. Sames, S. D. Kuduk, J. B. Sch T. Chen, A. K. Royyuru, S. D. Danishefsky, D. H. Live
Date :  04 Feb 02  (Deposition) - 20 Feb 02  (Release) - 15 Jun 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (59x)
NMR Structure *:  A  (1x)
Keywords :  Leukosialin, Cd43, Mucin Glycoprotein, Glycoprotein, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. M. Coltart, A. K. Royyuru, L. J. Williams, P. W. Glunz, D. Sames, S. D. Kuduk, J. B. Schwarz, X. T. Chen, S. J. Danishefsky, D. H. Live
Principles Of Mucin Architecture: Structural Studies On Synthetic Glycopeptides Bearing Clustered Mono-, Di-, Tri-, And Hexasaccharide Glycodomains
J. Am. Chem. Soc. V. 124 9833 2002
PubMed-ID: 12175243  |  Reference-DOI: 10.1021/JA020208F
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - LEUKOSIALIN (CD43) FRAGMENT
    Chains: A
    Engineered: YES
    Fragment: N-TERMINAL GLYCOPENTAPEPTIDE
    Other Details: SER A 1, THR A 2, THR A 3 MODIFIED WITH GLYCOSYLATION BY STF ANTIGEN
    Other Details - Source: FRAGMENT OF HUMAN SEQUENCE
    Synonym: PENTAPEPTIDE FRAGMENT OF SIALOPHORIN
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
NMR Structure (59x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

NMR Structure (2, 4)
No.NameCountTypeFull Name
1A2G3Ligand/IonN-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2ACE1Mod. Amino AcidACETYL GROUP
NMR Structure * (2, 4)
No.NameCountTypeFull Name
1A2G3Ligand/IonN-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2ACE1Mod. Amino AcidACETYL GROUP

(-) Sites  (3, 3)

NMR Structure (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:1 , THR A:2BINDING SITE FOR RESIDUE A2G A 7
2AC2SOFTWARETHR A:2 , THR A:3 , ALA A:4BINDING SITE FOR RESIDUE A2G A 10
3AC3SOFTWARETHR A:3BINDING SITE FOR RESIDUE A2G A 13

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1KYJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1KYJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1KYJ)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:6
                                    
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                   1kyj A 0 xSTTAV 5
                            |     
                            |     
                            0-ACE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1KYJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1KYJ)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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