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(-) Description

Title :  SOLUTION STRUCTURE OF THE CENTRAL CONSERVED REGION OF HUMAN RESPIRATORY SYNCYTIAL VIRUS ATTACHMENT GLYCOPROTEIN G 187
 
Authors :  M. Sugawara, J. Czaplicki, J. Ferrage, J. F. Haeuw, U. F. Power, N. Corvaia, T. Nguyen, A. Beck, A. Milon
Date :  29 Jan 02  (Deposition) - 17 Jun 03  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (16x)
Keywords :  Cysteine Nose, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Sugawara, J. Czaplicki, J. Ferrage, J. F. Haeuw, U. F. Power, N. Corvaia, T. Nguyen, A. Beck, A. Milton
Structure-Antigenicity Relationship Studies Of The Central Conserved Region Of Human Respiratory Syncytial Virus Protein G.
J. Pept. Res. V. 60 271 2002
PubMed-ID: 12383117  |  Reference-DOI: 10.1034/J.1399-3011.2002.21027.X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MAJOR SURFACE GLYCOPROTEIN G
    Chains: A
    Engineered: YES
    Fragment: RESIDUES 172-187
    Other Details: SYNTHESIS OF THE PEPTIDE WAS PERFORMED BY A SOLID PHASE METHOD USING FMOC/TBU CHEMISTRY.
    Synonym: ATTACHMENT GLYCOPROTEIN G
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure (16x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1KWD)

(-) Sites  (0, 0)

(no "Site" information available for 1KWD)

(-) SS Bonds  (2, 2)

NMR Structure
No.Residues
1A:173 -A:186
2A:176 -A:182

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1KWD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 1KWD)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:16
 aligned with GLYC_HRSVL | P20895 from UniProtKB/Swiss-Prot  Length:298

    Alignment length:16
                                   181      
           GLYC_HRSVL   172 PCSICSNNPTCWAICK 187
               SCOP domains d1kwda_ A:       SCOP domains
               CATH domains ---------------- CATH domains
               Pfam domains ---------------- Pfam domains
         Sec.struct. author ................ Sec.struct. author
                 SAPs(SNPs) ---------------- SAPs(SNPs)
                    PROSITE ---------------- PROSITE
                 Transcript ---------------- Transcript
                 1kwd A 172 PCSICSNNPTCWAICK 187
                                   181
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Peptides (792)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1KWD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1KWD)

(-) Gene Ontology  (10, 10)

NMR Structure(hide GO term definitions)
Chain A   (GLYC_HRSVL | P20895)
biological process
    GO:0030683    evasion or tolerance by virus of host immune response    Any process, either active or passive, by which a virus avoids the effects of the host organism's immune response. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0044228    host cell surface    The external part of the host cell wall and/or host plasma membrane.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.
    GO:0055036    virion membrane    The lipid bilayer surrounding a virion.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GLYC_HRSVL | P20895: 1kwe

(-) Related Entries Specified in the PDB File

1kwe SOLUTION STRUCTURE OF THE CENTRAL CONSERVED REGION OF HUMAN RESPIRATORY SYNCYTIAL VIRUS ATTACHMENT GLYCOPROTEIN G