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Title :   STRUCTURE OF HAEMOPHYLUS INFLUENZAE UNIVERSAL STRESS PROTEIN AT 1.85A RESOLUTION

Authors :   M. C. Sousa, D. B. Mckay

Date :   20 Jul 01 (Deposition) - 12 Dec 01 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.85

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: A,B,C,D  (1x)

Keywords :   Universal Stress Protein, Uspa, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. C. Sousa, D. B. Mckay
Structure Of The Universal Stress Protein Of Haemophilus Influenzae.
Structure V. 9 1135 2001
PubMed-ID: 11738040 | Reference-DOI: 10.1016/S0969-2126(01)00680-3
(for further references see the PDB file header)

Molecule 1 - UNIVERSAL STRESS PROTEIN A
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PTYB2
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	USPA
	Organism Scientific	:	HAEMOPHILUS INFLUENZAE
	Organism Taxid	:	727
	Synonym	:	USPA

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 4)

No.	Name	Count	Type	Full Name
1	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 3 (1, 4)

No.	Name	Count	Type	Full Name
1	SO4	4	Ligand/Ion	SULFATE ION

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:28 , HIS A:29 , ARG B:28 , HIS B:29	BINDING SITE FOR RESIDUE SO4 A 301
2	AC2	SOFTWARE	ARG C:28 , HIS C:29 , ARG D:28 , HIS D:29	BINDING SITE FOR RESIDUE SO4 C 302
3	AC3	SOFTWARE	HIS B:110 , HIS B:111 , GLN B:112 , LEU B:138	BINDING SITE FOR RESIDUE SO4 B 303
4	AC4	SOFTWARE	PHE D:42 , GLY D:88 , LYS D:117 , SER D:121 , HOH D:340 , HOH D:341	BINDING SITE FOR RESIDUE SO4 D 304

(no "SS Bond" information available for 1JMV)

(no "Cis Peptide Bond" information available for 1JMV)

(no "SAP(SNP)/Variant" information available for 1JMV)

(no "PROSITE Motif" information available for 1JMV)

(no "Exon" information available for 1JMV)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:140
 aligned with USPA_HAEIN | P44880 from UniProtKB/Swiss-Prot  Length:141

    Alignment length:140
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
           USPA_HAEIN     1 MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHHQDFWSKLMSSTRQVMNTIKIDMLVVPLRD 140
               SCOP domains d1jmva_ A: Universal stress protein A, UspA                                                                                                  SCOP domains
               CATH domains 1jmvA00 A:1-140 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee....hhhhhhhhhhhhhhhhh.eeeeeeeee.hhhhh...eehhhhhhh....hhhhhhhhhhhhhh......eeeeeehhhhhhhhhhhhh...eeeeee...hhhhhhhhhhhhhh....eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jmv A   1 MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHHQDFWSKLMSSTRQVMNTIKIDMLVVPLRD 140
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain B from PDB  Type:PROTEIN  Length:137
 aligned with USPA_HAEIN | P44880 from UniProtKB/Swiss-Prot  Length:141

    Alignment length:139
                                    10        20        30        40        50        60        70        80        90       100       110       120       130         
           USPA_HAEIN     1 MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHHQDFWSKLMSSTRQVMNTIKIDMLVVPLR 139
               SCOP domains d1jmvb_ B: Universal stress protein A, UspA                                                                                                 SCOP domains
               CATH domains 1jmvB00 B:1-139 Tyrosyl-Transfer RNA Synthetase , subun  it E, domain 1                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee...hhhhhhhhhhhhhhhhhh.eeeeeee.........eeee....--....hhhhhhhhhhhhh........eeeee.hhhhhhhhhhhhhh..eeee..hhhhhhhhh............eeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jmv B   1 MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMS--QDRISTETQKALLDLAESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHHQDFWSKLMSSTRQVMNTIKIDMLVVPLR 139
                                    10        20        30        40        50    |  |60        70        80        90       100       110       120       130         
                                                                                 55 58

Chain C from PDB  Type:PROTEIN  Length:133
 aligned with USPA_HAEIN | P44880 from UniProtKB/Swiss-Prot  Length:141

    Alignment length:138
                                    10        20        30        40        50        60        70        80        90       100       110       120       130        
           USPA_HAEIN     1 MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHHQDFWSKLMSSTRQVMNTIKIDMLVVPL 138
               SCOP domains d1jmvc_ C: Universal stress protein A, UspA                                                                                                SCOP domains
               CATH domains 1jmvC00 C:1-138 Tyrosyl-Transfer RNA Synthe  tase , subunit    E, domain 1                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeee.....hhhhhhhhhhhhhhhhh.eeeeeeeee...--....eehhhhhh..---hhhhhhhhhhhhhh...eeeeeeeeehhhhhhhhhhhhh...eeeeee...hhhhhhhhhhhhhh....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1jmv C   1 MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFS--YTGLIDVNMSSMQD---TETQKALLDLAESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHHQDFWSKLMSSTRQVMNTIKIDMLVVPL 138
                                    10        20        30        40  |  |  50        |-  |     70        80        90       100       110       120       130        
                                                                     43 46           59  63

Chain D from PDB  Type:PROTEIN  Length:127
 aligned with USPA_HAEIN | P44880 from UniProtKB/Swiss-Prot  Length:141

    Alignment length:137
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       
           USPA_HAEIN     1 MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHHQDFWSKLMSSTRQVMNTIKIDMLVVP 137
               SCOP domains d1jmvd_ D: Universal stress protein A, UspA                                                                                               SCOP domains
               CATH domains 1jmvD00 D:1-137 Tyrosyl-Transfer RNA Synthe tase , subu         nit E, domain 1                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee...hhhhhhhhhhhhhhhhhh.eeeeeee.....-...eeee....---------hhhhhhhhhhh.......eeeee.hhhhhhhhhhhhh...eeee..hhhhhhhhhhhh.........eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jmv D   1 MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFS-LYTGLIDVNMS---------TQKALLDLAESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHHQDFWSKLMSSTRQVMNTIKIDMLVVP 137
                                    10        20        30        40  | |   50    |    -    |   70        80        90       100       110       120       130       
                                                                     43 |        55        65                                                                        
                                                                       45

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Adenine nucleotide alpha hydrolase-like (440)

Superfamily: Adenine nucleotide alpha hydrolases-like (110)

Family: Universal stress protein-like (10)

Protein domain: Universal stress protein A, UspA (1)

Haemophilus influenzae [TaxId: 727] (1)

1a	d1jmva_	A:
1b	d1jmvb_	B:
1c	d1jmvc_	C:
1d	d1jmvd_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1 (328)

Haemophilus influenzae. Organism_taxid: 727. (2)

1a	1jmvA00	A:1-140
1b	1jmvB00	B:1-139
1c	1jmvC00	C:1-138
1d	1jmvD00	D:1-137

(no "Pfam Domain" information available for 1JMV)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (USPA_HAEIN | P44880)

biological process
	GO:0006950	response to stress	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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Description

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