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(-) Description

Title :  DES 1-6 BOVINE NEUROPHYSIN II COMPLEX WITH VASOPRESSIN
 
Authors :  J. P. Rose, B. -C. Wang
Date :  11 Jul 01  (Deposition) - 04 Feb 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Complex (Hormone Transport/Hormone), Hypothalamus, Neuropeptide (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. K. Wu, B. Hu, J. P. Rose, Z. J. Liu, T. L. Nguyen, C. Zeng, E. Breslow, B. C. Wang
Structures Of An Unliganded Neurophysin And Its Vasopressin Complex: Implications For Binding And Allosteric Mechanisms
Protein Sci. V. 10 1869 2001
PubMed-ID: 11514677  |  Reference-DOI: 10.1110/PS.10601
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NEUROPHYSIN 2
    ChainsA
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    Other DetailsPOSTERIOR PITUITARY GLAND
 
Molecule 2 - LYS VASOPRESSIN
    ChainsB
    EngineeredYES
    Other DetailsTHIS PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE OF THE PEPTIDE IS NATURALLY FOUND IN BOS TAURUS (BOVINE).
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (2x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1CD3Ligand/IonCADMIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CD-1Ligand/IonCADMIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:31 , ASP A:76 , HOH B:212BINDING SITE FOR RESIDUE CD A 301
2AC2SOFTWAREASP A:30 , GLU A:31 , GLU A:77BINDING SITE FOR RESIDUE CD A 302
3AC3SOFTWARELEU A:7 , GLU A:46BINDING SITE FOR RESIDUE CD A 303

(-) SS Bonds  (8, 8)

Asymmetric Unit
No.Residues
1A:10 -A:54
2A:13 -A:27
3A:21 -A:44
4A:28 -A:34
5A:61 -A:73
6A:67 -A:85
7A:74 -A:79
8B:1 -B:6

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1JK4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1JK4)

(-) PROSITE Motifs  (1, 1)

Asymmetric Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NEUROHYPOPHYS_HORMPS00264 Neurohypophysial hormones signature.NEU2_BOVIN20-28  1B:1-6
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NEUROHYPOPHYS_HORMPS00264 Neurohypophysial hormones signature.NEU2_BOVIN20-28  2B:1-6

(-) Exons   (4, 5)

Asymmetric Unit (4, 5)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSBTAT000000105551ENSBTAE00000085807chr13:52661338-52661505168NEU2_BOVIN1-40402A:7-9
B:1-6
3
6
1.2ENSBTAT000000105552ENSBTAE00000337556chr13:52662739-5266282587NEU2_BOVIN41-69291A:10-38
-
29
-
1.3ENSBTAT000000105553ENSBTAE00000272221chr13:52662827-52662941115NEU2_BOVIN70-108391A:39-77
-
39
-
1.4ENSBTAT000000105554ENSBTAE00000085809chr13:52663119-52663358240NEU2_BOVIN108-166591A:77-85
-
9
-

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:79
 aligned with NEU2_BOVIN | P01180 from UniProtKB/Swiss-Prot  Length:166

    Alignment length:79
                                    47        57        67        77        87        97       107         
           NEU2_BOVIN    38 LRQCLPCGPGGKGRCFGPSICCGDELGCFVGTAEALRCQEENYLPSPCQSGQKPCGSGGRCAAAGICCNDESCVTEPEC 116
               SCOP domains d1jk4a_ A: Neurophysin II                                                       SCOP domains
               CATH domains 1jk4A00 A:7-85 Neurophysin II, chain A                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eehhhhheeeee..eeee...eeee.hhhhhhhhhhhhh.........ee...eeeee..eee....eee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.1Exon 1.2  PDB: A:10-38       Exon 1.3  PDB: A:39-77 UniProt: 70-108 -------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------Exon 1.4  Transcript 1 (2)
                 1jk4 A   7 LRQCLPCGPGGKGRCFGPSICCGDELGCFVGTAEALRCQEENYLPSPCQSGQKPCGSGGRCAAAGICCNDESCVTEPEC  85
                                    16        26        36        46        56        66        76         

Chain B from PDB  Type:PROTEIN  Length:6
 aligned with NEU2_BOVIN | P01180 from UniProtKB/Swiss-Prot  Length:166

    Alignment length:6
           NEU2_BOVIN    20 CYFQNC  25
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE NEUROH PROSITE
           Transcript 1 (1) 1.1    Transcript 1 (1)
           Transcript 1 (2) ------ Transcript 1 (2)
                 1jk4 B   1 CYFQNC   6

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1JK4)

(-) Gene Ontology  (19, 19)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (NEU2_BOVIN | P01180)
molecular function
    GO:0031894    V1A vasopressin receptor binding    Interacting selectively and non-covalently with a V1A vasopressin receptor.
    GO:0043027    cysteine-type endopeptidase inhibitor activity involved in apoptotic process    Stops, prevents or reduces the activity of a cysteine-type endopeptidase involved in the apoptotic process.
    GO:0005179    hormone activity    The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects; all bind receptors and trigger some biological process.
    GO:0005185    neurohypophyseal hormone activity    The action characteristic of a neurohypophyseal hormone, any of a family of structurally and functionally related nonapeptides that are synthesized as part of a larger precursor molecule comprising a signal peptide, the nonapeptide hormone, and a neurophysin.
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004871    signal transducer activity    Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
biological process
    GO:0070371    ERK1 and ERK2 cascade    An intracellular protein kinase cascade containing at least ERK1 or ERK2 (MAPKs), a MEK (a MAPKK) and a MAP3K. The cascade can also contain two additional tiers: the upstream MAP4K and the downstream MAP Kinase-activated kinase (MAPKAPK). The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell.
    GO:0043066    negative regulation of apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
    GO:0043154    negative regulation of cysteine-type endopeptidase activity involved in apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of a cysteine-type endopeptidase activity involved in the apoptotic process.
    GO:0090201    negative regulation of release of cytochrome c from mitochondria    Any process that decreases the rate, frequency or extent of release of cytochrome c from mitochondria, the process in which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation.
    GO:0030819    positive regulation of cAMP biosynthetic process    Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate).
    GO:0010628    positive regulation of gene expression    Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
    GO:0033138    positive regulation of peptidyl-serine phosphorylation    Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-serine.
    GO:0070528    protein kinase C signaling    A series of reactions, mediated by the intracellular serine/threonine kinase protein kinase C, which occurs as a result of a single trigger reaction or compound.
    GO:0050880    regulation of blood vessel size    Any process that modulates the size of blood vessels.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0042310    vasoconstriction    A decrease in the diameter of blood vessels, especially arteries, due to constriction of smooth muscle cells that line the vessels, and usually causing an increase in blood pressure.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NEU2_BOVIN | P011801jk6 1npo 2bn2

(-) Related Entries Specified in the PDB File

1jk6 UNCOMPLEXED DES 1-6 BOVINE NEUROPHYSIN
1npo NEUROPHYSIN II OXYTOCIN COMPLEX
2bn2 NEUROPHYSIN II DIPEPTIDE COMPLEX