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(-) Description

Title :  CRYSTAL STRUCTURE ANALYSIS OF THE ABC TRANSPORTER FROM THERMOTOGA MARITIMA
 
Authors :  R. Zhang, A. Joachimiak, A. Edwards, A. Savchenko, S. Beasley, Midwest Center For Structural Genomics (Mcsg)
Date :  28 Jun 01  (Deposition) - 14 Aug 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Atp Binding Protein, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Zhang, A. Joachimiak, A. Edwards, A. Savchenko, S. Beasley
The 2. 0 A Crystal Structure Of Abc Transporter From Thermotoga Maritima
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ABC TRANSPORTER
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336
    Synonym: BRANCHED CHAIN AMINO ACID ABC TRANSPORTER

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric/Biological Unit (2, 10)
No.NameCountTypeFull Name
1ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2MSE9Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:15 , ILE A:18 , GLY A:41 , ALA A:42 , GLY A:43 , LYS A:44 , THR A:45 , THR A:46 , ALA A:74 , HIS A:75 , ASN A:78 , GLU A:87 , ASP A:163 , GLU A:164 , HOH A:420 , HOH A:461BINDING SITE FOR RESIDUE ATP A 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1JI0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1JI0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1JI0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1JI0)

(-) Exons   (0, 0)

(no "Exon" information available for 1JI0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:240
 aligned with Q9X0M3_THEMA | Q9X0M3 from UniProtKB/TrEMBL  Length:239

    Alignment length:240
                             1                                                                                                                                                                                                                                              
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239
         Q9X0M3_THEMA     - -MSDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEMVRKAYLGVA 239
               SCOP domains d1ji0a_ A: Branched chain aminoacid ABC transporter                                                                                                                                                                                              SCOP domains
               CATH domains -1ji0A00 A:1-239 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                            CATH domains
               Pfam domains ---------------------------------------------ABC_tran-1ji0A01 A:45-167                                                                                                  ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeeeeeee..eeeeeeeeeeee...eeeee.....hhhhhhhhhh......eeeeee..ee....hhhhhh...eeee..........hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhhhhhh...eeeee.hhhhhhhhh.eeeeee..eeeeeeehhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ji0 A   0 mVSDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRmGIALVPEGRRIFPELTVYENLmmGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQmLAIGRALmSRPKLLmmDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEmVRKAYLGVA 239
                            |        9        19        29        39        49        59        69        79|       89        99  ||   109       119       129       139      |149    |  159 ||    169       179       189       199       209       219       229|      239
                            |                                                                              80-MSE               102-MSE                                     146-MSE 154-MSE  ||                                                                 230-MSE     
                            0-MSE                                                                                                103-MSE                                                   161-MSE                                                                          
                                                                                                                                                                                            162-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: P-loop_NTPase (1112)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q9X0M3_THEMA | Q9X0M3)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0015658    branched-chain amino acid transmembrane transporter activity    Enables the transfer of branched-chain amino acids from one side of a membrane to the other. Branched-chain amino acids are amino acids with a branched carbon skeleton without rings.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0015803    branched-chain amino acid transport    The directed movement of branched-chain amino acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Branched-chain amino acids are amino acids with a branched carbon skeleton without rings.

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 Related Entries

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(-) Related Entries Specified in the PDB File

1b0u 1B0U IS THE ATP-BINDING SUBUNIT OF THE HISTIDINE PERMEASE FROM SALMONELLA TYPHIMURIUM RELATED ID: APC046 RELATED DB: TARGETDB