1JG5 - JenaLib

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Title :   CRYSTAL STRUCTURE OF RAT GTP CYCLOHYDROLASE I FEEDBACK REGULATORY PROTEIN, GFRP

Authors :   G. Bader, S. Schiffmann, A. Herrmann, M. Fischer, M. Gutlich, G. Auerbach, T. Ploom, A. Bacher, R. Huber, T. Lemm

Date :   23 Jun 01 (Deposition) - 10 Oct 01 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.60

Chains :   Asym./Biol. Unit : A,B,C,D,E

Keywords :   Alpha/Beta Structure, Beta Sheet, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. Bader, S. Schiffmann, A. Herrmann, M. Fischer, M. Gutlich, G. Auerbach, T. Ploom, A. Bacher, R. Huber, T. Lemm
Crystal Structure Of Rat Gtp Cyclohydrolase I Feedback Regulatory Protein, Gfrp.
J. Mol. Biol. V. 312 1051 2001
PubMed-ID: 11580249 | Reference-DOI: 10.1006/JMBI.2001.5011
(for further references see the PDB file header)

Molecule 1 - GTP CYCLOHYDROLASE I FEEDBACK REGULATORY PROTEIN
	Chains	:	A, B, C, D, E
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PQE(7)
	Expression System Strain	:	XL1
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Common	:	NORWAY RAT
	Organism Scientific	:	RATTUS NORVEGICUS
	Organism Taxid	:	10116

		1	2	3	4	5
Asymmetric/Biological Unit	:	A	B	C	D	E

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 5)

No.	Name	Count	Type	Full Name
1	K	5	Ligand/Ion	POTASSIUM ION

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR E:7 , GLN E:8 , ARG E:10 , VAL E:13 , GLY E:14	BINDING SITE FOR RESIDUE K E 1500
2	AC2	SOFTWARE	THR C:7 , GLN C:8 , ARG C:10 , VAL C:13 , GLY C:14	BINDING SITE FOR RESIDUE K C 1501
3	AC3	SOFTWARE	THR D:7 , GLN D:8 , ARG D:10 , VAL D:13 , GLY D:14	BINDING SITE FOR RESIDUE K D 1502
4	AC4	SOFTWARE	THR B:7 , GLN B:8 , ARG B:10 , VAL B:13 , GLY B:14	BINDING SITE FOR RESIDUE K B 1503
5	AC5	SOFTWARE	THR A:7 , GLN A:8 , ARG A:10 , VAL A:13 , GLY A:14	BINDING SITE FOR RESIDUE K A 1504

(no "SS Bond" information available for 1JG5)

Asymmetric/Biological Unit

No.	Residues
1	Ile A:9	-	Arg A:10
2	Gly A:14	-	Pro A:15
3	Ile B:9	-	Arg B:10
4	Gly B:14	-	Pro B:15
5	Ile C:9	-	Arg C:10
6	Gly C:14	-	Pro C:15
7	Ile D:9	-	Arg D:10
8	Gly D:14	-	Pro D:15
9	Ile E:9	-	Arg E:10
10	Gly E:14	-	Pro E:15

(no "SAP(SNP)/Variant" information available for 1JG5)

(no "PROSITE Motif" information available for 1JG5)

Asymmetric/Biological Unit (3, 15)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENSRNOT00000016458	1	ENSRNOE00000116851	chr3:105683288-105683389	102	GFRP_RAT	1-12	12	5	A:1-11 B:1-11 C:1-11 D:1-11 E:1-11	11 11 11 11 11
1.2	ENSRNOT00000016458	2	ENSRNOE00000116997	chr3:105684784-105684878	95	GFRP_RAT	13-44	32	5	A:12-43 B:12-43 C:12-43 D:12-43 E:12-43	32 32 32 32 32
1.3	ENSRNOT00000016458	3	ENSRNOE00000117234	chr3:105686889-105687348	460	GFRP_RAT	44-84	41	5	A:43-83 B:43-83 C:43-83 D:43-83 E:43-83	41 41 41 41 41

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:83
 aligned with GFRP_RAT | P70552 from UniProtKB/Swiss-Prot  Length:84

    Alignment length:83
                                    11        21        31        41        51        61        71        81   
              GFRP_RAT    2 PYLLISTQIRMEVGPTMVGDEHSDPELMQQLGASKRRVLGNNFYEYYVNDPPRIVLDKLECRGFRVLSMTGVGQTLVWCLHKE 84
               SCOP domains d1jg5a_ A: GTP cyclohydrolase I feedback regulatory protein, GFRP                   SCOP domains
               CATH domains 1jg5A00 A:1-83  [code=3.30.1410.10, no name defined]                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.......eeee....hhhhhhhh..eee........eeee..hhhhhhhhhhhh..eeeeeeee..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1   Exon 1.2  PDB: A:12-43          ---------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------Exon 1.3  PDB: A:43-83 UniProt: 44-84     Transcript 1 (2)
                  1jg5 A  1 PYLLISTQIRMEVGPTMVGDEHSDPELMQQLGASKRRVLGNNFYEYYVNDPPRIVLDKLECRGFRVLSMTGVGQTLVWCLHKE 83
                                    10        20        30        40        50        60        70        80

Chain B from PDB  Type:PROTEIN  Length:83
 aligned with GFRP_RAT | P70552 from UniProtKB/Swiss-Prot  Length:84

    Alignment length:83
                                    11        21        31        41        51        61        71        81   
              GFRP_RAT    2 PYLLISTQIRMEVGPTMVGDEHSDPELMQQLGASKRRVLGNNFYEYYVNDPPRIVLDKLECRGFRVLSMTGVGQTLVWCLHKE 84
               SCOP domains d1jg5b_ B: GTP cyclohydrolase I feedback regulatory protein, GFRP                   SCOP domains
               CATH domains 1jg5B00 B:1-83  [code=3.30.1410.10, no name defined]                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.......eeeee...hhhhhhhh..eee........eeee..hhhhhhhhhhhh..eeeeeeee..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1   Exon 1.2  PDB: B:12-43          ---------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------Exon 1.3  PDB: B:43-83 UniProt: 44-84     Transcript 1 (2)
                  1jg5 B  1 PYLLISTQIRMEVGPTMVGDEHSDPELMQQLGASKRRVLGNNFYEYYVNDPPRIVLDKLECRGFRVLSMTGVGQTLVWCLHKE 83
                                    10        20        30        40        50        60        70        80

Chain C from PDB  Type:PROTEIN  Length:83
 aligned with GFRP_RAT | P70552 from UniProtKB/Swiss-Prot  Length:84

    Alignment length:83
                                    11        21        31        41        51        61        71        81   
              GFRP_RAT    2 PYLLISTQIRMEVGPTMVGDEHSDPELMQQLGASKRRVLGNNFYEYYVNDPPRIVLDKLECRGFRVLSMTGVGQTLVWCLHKE 84
               SCOP domains d1jg5c_ C: GTP cyclohydrolase I feedback regulatory protein, GFRP                   SCOP domains
               CATH domains 1jg5C00 C:1-83  [code=3.30.1410.10, no name defined]                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.......eeee....hhhhhhhh..eee........eeee..hhhhhhhhhhhh..eeeeeeee..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1   Exon 1.2  PDB: C:12-43          ---------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------Exon 1.3  PDB: C:43-83 UniProt: 44-84     Transcript 1 (2)
                  1jg5 C  1 PYLLISTQIRMEVGPTMVGDEHSDPELMQQLGASKRRVLGNNFYEYYVNDPPRIVLDKLECRGFRVLSMTGVGQTLVWCLHKE 83
                                    10        20        30        40        50        60        70        80

Chain D from PDB  Type:PROTEIN  Length:83
 aligned with GFRP_RAT | P70552 from UniProtKB/Swiss-Prot  Length:84

    Alignment length:83
                                    11        21        31        41        51        61        71        81   
              GFRP_RAT    2 PYLLISTQIRMEVGPTMVGDEHSDPELMQQLGASKRRVLGNNFYEYYVNDPPRIVLDKLECRGFRVLSMTGVGQTLVWCLHKE 84
               SCOP domains d1jg5d_ D: GTP cyclohydrolase I feedback regulatory protein, GFRP                   SCOP domains
               CATH domains 1jg5D00 D:1-83  [code=3.30.1410.10, no name defined]                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.......eeeee...hhhhhhhh..eee........eeee..hhhhhhhhhhhh..eeeeeeee..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1   Exon 1.2  PDB: D:12-43          ---------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------Exon 1.3  PDB: D:43-83 UniProt: 44-84     Transcript 1 (2)
                  1jg5 D  1 PYLLISTQIRMEVGPTMVGDEHSDPELMQQLGASKRRVLGNNFYEYYVNDPPRIVLDKLECRGFRVLSMTGVGQTLVWCLHKE 83
                                    10        20        30        40        50        60        70        80

Chain E from PDB  Type:PROTEIN  Length:83
 aligned with GFRP_RAT | P70552 from UniProtKB/Swiss-Prot  Length:84

    Alignment length:83
                                    11        21        31        41        51        61        71        81   
              GFRP_RAT    2 PYLLISTQIRMEVGPTMVGDEHSDPELMQQLGASKRRVLGNNFYEYYVNDPPRIVLDKLECRGFRVLSMTGVGQTLVWCLHKE 84
               SCOP domains d1jg5e_ E: GTP cyclohydrolase I feedback regulatory protein, GFRP                   SCOP domains
               CATH domains 1jg5E00 E:1-83  [code=3.30.1410.10, no name defined]                                CATH domains
           Pfam domains (1) GFRP-1jg5E01 E:1-83                                                                 Pfam domains (1)
           Pfam domains (2) GFRP-1jg5E02 E:1-83                                                                 Pfam domains (2)
           Pfam domains (3) GFRP-1jg5E03 E:1-83                                                                 Pfam domains (3)
           Pfam domains (4) GFRP-1jg5E04 E:1-83                                                                 Pfam domains (4)
           Pfam domains (5) GFRP-1jg5E05 E:1-83                                                                 Pfam domains (5)
         Sec.struct. author .eeeeeee.......eeee....hhhhhhhhh.eee........eeee..hhhhhhhhhhhh..eeeeeeee..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1   Exon 1.2  PDB: E:12-43          ---------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------Exon 1.3  PDB: E:43-83 UniProt: 44-84     Transcript 1 (2)
                  1jg5 E  1 PYLLISTQIRMEVGPTMVGDEHSDPELMQQLGASKRRVLGNNFYEYYVNDPPRIVLDKLECRGFRVLSMTGVGQTLVWCLHKE 83
                                    10        20        30        40        50        60        70        80

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K (4)

Homologous Superfamily: [code=3.30.1410.10, no name defined] (4)

Norway rat (Rattus norvegicus) (4)

1a	1jg5A00	A:1-83
1b	1jg5B00	B:1-83
1c	1jg5C00	C:1-83
1d	1jg5D00	D:1-83
1e	1jg5E00	E:1-83

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: GFRP] (2)

Family: GFRP (2)

Rattus norvegicus (Rat) (2)

1a	GFRP-1jg5E01	E:1-83
1b	GFRP-1jg5E02	E:1-83
1c	GFRP-1jg5E03	E:1-83
1d	GFRP-1jg5E04	E:1-83
1e	GFRP-1jg5E05	E:1-83

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D,E (GFRP_RAT | P70552)

molecular function
	GO:0044549	GTP cyclohydrolase binding	Interacting selectively and non-covalently with a GTP cyclohydrolase.
	GO:0030742	GTP-dependent protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) using energy from the hydrolysis of GTP.
	GO:0016597	amino acid binding	Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
	GO:0019899	enzyme binding	Interacting selectively and non-covalently with any enzyme.
	GO:0004857	enzyme inhibitor activity	Binds to and stops, prevents or reduces the activity of an enzyme.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0043105	negative regulation of GTP cyclohydrolase I activity	Any process that stops or reduces the activity of the enzyme GTP cyclohydrolase I.
	GO:0009890	negative regulation of biosynthetic process	Any process that stops, prevents, or reduces the rate of the chemical reactions and pathways resulting in the formation of substances.
	GO:0006461	protein complex assembly	The aggregation, arrangement and bonding together of a set of components to form a protein complex.
	GO:0051291	protein heterooligomerization	The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers that are not all identical. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer.
	GO:0045428	regulation of nitric oxide biosynthetic process	Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0030425	dendrite	A neuron projection that has a short, tapering, often branched, morphology, receives and integrates signals from other neurons or from sensory stimuli, and conducts a nerve impulse towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body.
	GO:0042470	melanosome	A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0031965	nuclear membrane	Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0043234	protein complex	A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.

Asymmetric/Biological Unit
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(no "Related Entries Specified in the PDB File" available for 1JG5)

Description

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Chains, Units

Ligands, Modified Residues, Ions (1, 5)

Sites (5, 5)

SS Bonds (0, 0)

Cis Peptide Bonds (10, 10)

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Exons (3, 15)

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