1J6P - JenaLib

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Title :   CRYSTAL STRUCTURE OF METAL-DEPENDENT HYDROLASE OF CYTOSINEDEMANIASE/CHLOROHYDROLASE FAMILY (TM0936) FROM THERMOTOGA MARITIMA AT 1.9 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   09 Jul 02 (Deposition) - 30 Oct 02 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A
Biol. Unit 1: A  (1x)
Biol. Unit 2: A  (2x)

Keywords :   Structural Genomics, Tm0936, Jcsg, Metal-Dependent Hydrolase Of Cytosinedemaniase/Chlorohydrolase Family, Psi, Protein Structure Initiative, Joint Center For Structural Genomics, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Metal-Dependent Hydrolase Of Cytosinedemaniase/Chlorohydrolase Family (Tm0936) From Thermotoga Maritima At 1. 9 A Resolution
To Be Published
PubMed: search

Molecule 1 - METAL-DEPENDENT HYDROLASE OF CYTOSINEDEMANIASE/CHLOROHYDROLASE FAMILY
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	TM0936
	Organism Scientific	:	THERMOTOGA MARITIMA
	Organism Taxid	:	2336

		1
Asymmetric Unit	:	A
Biological Unit 1 (1x)	:	A
Biological Unit 2 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 16)

No.	Name	Count	Type	Full Name
1	MSE	15	Mod. Amino Acid	SELENOMETHIONINE
2	NI	1	Ligand/Ion	NICKEL (II) ION

Biological Unit 1 (1, 15)

No.	Name	Count	Type	Full Name
1	MSE	15	Mod. Amino Acid	SELENOMETHIONINE
2	NI	-1	Ligand/Ion	NICKEL (II) ION

Biological Unit 2 (1, 30)

No.	Name	Count	Type	Full Name
1	MSE	30	Mod. Amino Acid	SELENOMETHIONINE
2	NI	-1	Ligand/Ion	NICKEL (II) ION

Asymmetric Unit (1, 1)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:55 , HIS A:57 , HIS A:200 , ASP A:279 , HOH A:515 , HOH A:657	BINDING SITE FOR RESIDUE NI A 501

(no "SS Bond" information available for 1J6P)

Asymmetric Unit

No.	Residues
1	Phe A:351	-	Pro A:352

(no "SAP(SNP)/Variant" information available for 1J6P)

(no "PROSITE Motif" information available for 1J6P)

(no "Exon" information available for 1J6P)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:407
 aligned with MTAD_THEMA | Q9X034 from UniProtKB/Swiss-Prot  Length:406

    Alignment length:407
                              1                                                                                                                                                                                                                                                                                                                                                                                                                    
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       
           MTAD_THEMA     - --MIIGNCLILKDFSSEPFWGAVEIENGTIKRVLQGEVKVDLDLSGKLVMPALFNTHTHAPMTLLRGVAEDLSFEEWLFSKVLPIEDRLTEKMAYYGTILAQMEMARHGIAGFVDMYFHEEWIAKAVRDFGMRALLTRGLVDSNGDDGGRLEENLKLYNEWNGFEGRIFVGFGPHSPYLCSEEYLKRVFDTAKSLNAPVTIHLYETSKEEYDLEDILNIGLKEVKTIAAHCVHLPERYFGVLKDIPFFVSHNPASNLKLGNGIAPVQRMIEHGMKVTLGTDGAASNNSLNLFFEMRLASLLQKAQNPRNLDVNTCLKMVTYDGAQAMGFKSGKIEEGWNADLVVIDLDLPEMFPVQNIKNHLVHAFSGEVFATMVAGKWIYFDGEYPTIDSEEVKRELARIEKELYS 405
               SCOP domains d1j6pa1 A:-1-49,A:331-405                          d1j6pa2 A:50-330 Hypothetical protein TM0936, probable catalytic domain                                                                                                                                                                                                                  d1j6pa1 A:-1-49,A:331-405 Hypothetical protein TM0936                       SCOP domains
               CATH domains 1j6pA01 A:-1-49,A:331-384                          1j6pA02 A:50-330 Metal-dependent hydrolases                                                                                                                                                                                                                                              1j6pA01 A:-1-49,A:331-384 Urease, subunit C, domain 1 --------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee........eeeeeeee..eeeeeee......ee...eeeee.eeeeeehhhhhhhh......hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhh.eeeeeeee........hhhhhhhhhhhhhhhhhh.eeeeeee......hhhhhhhhhhhhhhhh..eeeee.........hhhhhh.......eeeee....hhhhhhhhh...eeeeehhhhhhhh.....hhhhhhhh..eeee...........hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.............eeeee..hhhhhhhhhhhhhhhhh......eeee..eeeee.......hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1j6p A  -1 HHmIIGNCLILKDFSSEPFWGAVEIENGTIKRVLQGEVKVDLDLSGKLVmPALFNTHTHAPmTLLRGVAEDLSFEEWLFSKVLPIEDRLTEKmAYYGTILAQmEmARHGIAGFVDmYFHEEWIAKAVRDFGmRALLTRGLVDSNGDDGGRLEENLKLYNEWNGFEGRIFVGFGPHSPYLCSEEYLKRVFDTAKSLNAPVTIHLYETSKEEYDLEDILNIGLKEVKTIAAHCVHLPERYFGVLKDIPFFVSHNPASNLKLGNGIAPVQRmIEHGmKVTLGTDGAASNNSLNLFFEmRLASLLQKAQNPRNLDVNTCLKmVTYDGAQAmGFKSGKIEEGWNADLVVIDLDLPEmFPVQNIKNHLVHAFSGEVFATmVAGKWIYFDGEYPTIDSEEVKRELARIEKELYS 405
                              |      8        18        28        38        48        58 |      68        78        88  |     98  | |  108     | 118       128 |     138       148       158       168       178       188       198       208       218       228       238       248       258       268   |   278       288    |  298       308       318      |328       338       348 |     358       368   |   378       388       398       
                              |                                             48-MSE      60-MSE                         91-MSE   101-MSE      114-MSE         130-MSE                                                                                                                                  267-MSE|                  293-MSE                316-MSE  325-MSE                  350-MSE               372-MSE                             
                              1-MSE                                                                                               103-MSE                                                                                                                                                                  272-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Barrel (2994)

Topology: TIM Barrel (2806)

Homologous Superfamily: Metal-dependent hydrolases (190)

Thermotoga maritima. Organism_taxid: 2336. (5)

1j6pA02

A:50-330

Class: Mainly Beta (13760)

Architecture: Roll (1513)

Topology: Urease, subunit C; domain 1 (95)

Homologous Superfamily: Urease, subunit C, domain 1 (95)

Thermotoga maritima. Organism_taxid: 2336. (3)

1j6pA01

A:-1-49,A:331-384

(no "Pfam Domain" information available for 1J6P)

Asymmetric Unit(hide GO term definitions)

Chain A (MTAD_THEMA | Q9X034)

molecular function
	GO:0090614	5'-methylthioadenosine deaminase activity	Catalysis of the reaction: 5'methyl thioadenosine + H2O = 5'methyl thioinosine + NH3.
	GO:0050270	S-adenosylhomocysteine deaminase activity	Catalysis of the reaction: S-adenosyl-L-homocysteine + H(2)O + H(+) = S-inosyl-L-homocysteine + NH(4)(+).
	GO:0004000	adenosine deaminase activity	Catalysis of the reaction: adenosine + H2O = inosine + NH3.
	GO:0019239	deaminase activity	Catalysis of the removal of an amino group from a substrate, producing ammonia (NH3).
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	Catalysis of the hydrolysis of any carbon-nitrogen bond, C-N, with the exception of peptide bonds.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0019700	organic phosphonate catabolic process	The chemical reactions and pathways resulting in the breakdown of phosphonates, any organic compound containing one or more C-PO(OH)2 or C-PO(OR)2 (with R=alkyl, aryl) groups. Catabolism of phosphonic acid itself, an inorganic compound without the biochemically relevant C-P bond, is not included.

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		Phe A:351 - Pro A:352	[ RasMol ]

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Description

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Ligands, Modified Residues, Ions (2, 16)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

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