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(-) Description

Title :  CRYSTAL STRUCTURE OF AN ARCHEASE, POSSIBLE CHAPERONE (TM1083) FROM THERMOTOGA MARITIMA AT 2.0 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  03 Jul 02  (Deposition) - 31 Jul 02  (Release) - 28 Jul 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Archease, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Archease, Possible Chaperone (Tm1083) From Thermotoga Maritima At 2. 0 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ARCHEASE, POSSIBLE CHAPERONE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: TM1083
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:13 , ASP A:16 , ASP A:129 , THR A:130 , HOH A:308 , HOH A:378 , HOH A:408BINDING SITE FOR RESIDUE CA A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1J5U)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1J5U)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1J5U)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 1J5U)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:127
 aligned with ARCH_THEMA | Q9X0H1 from UniProtKB/Swiss-Prot  Length:124

    Alignment length:127
                               1                                                                                                                           
                               |     7        17        27        37        47        57        67        77        87        97       107       117       
           ARCH_THEMA     - ---MRKPIEHTADIAYEISGNSYEELLEEARNILLEEEGIVLDTEEKEKMYPLEETEDAFFDTVNDWILEISKGWAPWRIKREGNELKVTFRKIRKKEGTEIKALTYHLLKFERDGDVLKTKVVFDT 124
               SCOP domains d1j5ua_ A: Hypothetical protein TM1083                                                                                          SCOP domains
               CATH domains ----------1j5uA01 A:14-130  [code=3.55.10.10, no name defined]                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeee.hhhhhhhhhhhhhhhhhh.eeeeeeeeeeee...hhhhhhhhhhhhhhhhhh.eeeeeeeee..eeeeeeeeeee.......ee.......eee..eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1j5u A   4 HHHmRKPIEHTADIAYEISGNSYEELLEEARNILLEEEGIVLDTEEKEKmYPLEETEDAFFDTVNDWILEISKGWAPWRIKREGNELKVTFRKIRKKEGTEIKALTYHLLKFERDGDVLKTKVVFDT 130
                               |    13        23        33        43        53        63        73        83        93       103       113       123       
                               |                                            53-MSE                                                                         
                               7-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1J5U)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (ARCH_THEMA | Q9X0H1)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0008033    tRNA processing    The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.

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