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(-) Description

Title :  RIBOSOMAL RNAS AND PROTEINS AS WELL AS FACTORS
 
Authors :  K. Nagano, N. Nagano
Date :  17 May 01  (Deposition) - 30 Sep 03  (Release) - 30 Sep 03  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A,B
Keywords :  Noncognate Codon-Anticodon Interaction (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. Nagano, N. Nagano
Stereochemical Mechanism Of Translocation, Termination And Codon Recognition Of E. Coli 16S And 23S Ribosomal Rnas
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-R(P*UP*UP*UP*UP*AP*UP*UP*UP*U)-3'
    ChainsA
    Organism CommonBACTERIA
    Organism ScientificESCHERICHIA COLI
    Other DetailsMESSENGER RNA
 
Molecule 2 - TRANSFER RNA BOUND TO R SITE
    ChainsB
    Organism CommonBACTERIA
    Organism ScientificESCHERICHIA COLI

 Structural Features

(-) Chains, Units

  
Theoretical Model 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 4)

Theoretical Model (4, 4)
No.NameCountTypeFull Name
1OMC1Mod. NucleotideO2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
2OMG1Mod. NucleotideO2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
3PSU1Mod. NucleotidePSEUDOURIDINE-5'-MONOPHOSPHATE
4YG1Mod. ResidueWYBUTOSINE

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1IPY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1IPY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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Chain A from PDB  Type:RNA  Length:9
                                          
                1ipy A 1626 UUUUAUUUU 1634

Chain B from PDB  Type:RNA  Length:9
                                          
                1ipy B 1931 AcUgAAgAu 1939
                             | |  | |
                          1932-OMC| |
                            1934-OMG|
                               1937-YG
                                 1939-PSU

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Theoretical Model(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

1ip8 MODEL 1
1ipl MODEL 2
1ipm MODEL 3
1ipn MODEL 4
1ipo MODEL 5
1ipq MODEL 6
1ipr MODEL 7
1ipu MODEL 8
1ipv MODEL 9
1ipx MODEL 10
1ipz MODEL 12