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(-) Description

Title :  THE SEPTUM SITE-DETERMINING PROTEIN MIND COMPLEXED WITH MG-ADP FROM PYROCOCCUS HORIKOSHII OT3
 
Authors :  N. Sakai, M. Yao, H. Itou, N. Watanabe, F. Yumoto, M. Tanokura, I. Tanaka
Date :  21 Mar 01  (Deposition) - 26 Sep 01  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Adp-Binding Protein, P-Loop, Mind, Cell Division Inhibitor, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Sakai, M. Yao, H. Itou, N. Watanabe, F. Yumoto, M. Tanokura, I. Tanak
The Three-Dimensional Structure Of Septum Site-Determining Protein Mind From Pyrococcus Horikoshii Ot3 In Complex With Mg-Adp.
Structure V. 9 817 2001
PubMed-ID: 11566131  |  Reference-DOI: 10.1016/S0969-2126(01)00638-4

(-) Compounds

Molecule 1 - PROBABLE CELL DIVISION INHIBITOR MIND
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-22B(+)
    Expression System Strain: BL21-CODONPLUS(DE3)-RIL-X
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MIND-2
    Organism Scientific: PYROCOCCUS HORIKOSHII
    Organism Taxid: 70601
    Strain: OT3

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric/Biological Unit (3, 11)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG1Ligand/IonMAGNESIUM ION
3MSE9Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:17 , ADP A:301 , HOH A:433 , HOH A:434 , HOH A:435BINDING SITE FOR RESIDUE MG A 302
2AC2SOFTWAREGLY A:13 , THR A:14 , GLY A:15 , LYS A:16 , THR A:17 , THR A:18 , ASN A:171 , ARG A:172 , ILE A:197 , PRO A:198 , GLU A:199 , ASP A:200 , ILE A:203 , ARG A:204 , THR A:207 , MG A:302 , HOH A:413 , HOH A:434BINDING SITE FOR RESIDUE ADP A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ION)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ION)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:243
 aligned with O58346_PYRHO | O58346 from UniProtKB/TrEMBL  Length:245

    Alignment length:243
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240   
         O58346_PYRHO     1 MTRIISIVSGKGGTGKTTVTANLSVALGEMGRKVLAVDGDLTMANLSLVLGVDDVNITLHDVLAGDAKLEDAIYMTQFENVYILPGAVDWEHVIKADPRKLPEVIKSLKGKYDFILIDCPAGLQLDAMSAMLSGEEAILVTNPEISCLTDTMKVGMVLKKAGLAILGFILNRYGRSERDIPPEAAQDVMDVPLLAVIPEDPVIREGTLEGIPAVKYKPESKGAQAFIKLAEEVDKLAGIKAKI 243
               SCOP domains d1iona_ A: Cell division regulator MinD                                                                                                                                                                                                             SCOP domains
               CATH domains -1ionA00 A:2-243 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee......hhhhhhhhhhhhhhhh...eeeee......hhhhhh.......hhhhhhh...hhhhhhee.....eeee....hhhhhhhhhhhhhhhhhhh......eeeee.....hhhhhhhhh...eeeeee..hhhhhhhhhhhhhhhhhh..eeeeeeeeee.......hhhhhhhhh...eeeeee.hhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ion A   1 mTRIISIVSGKGGTGKTTVTANLSVALGEmGRKVLAVDGDLTmANLSLVLGVDDVNITLHDVLAGDAKLEDAIYmTQFENVYILPGAVDWEHVIKADPRKLPEVIKSLKGKYDFILIDCPAGLQLRAmSAmLSGEEAILVTNPEISCLTDTmKVGmVLKKAGLAILGFILNRYGRSERDIPPEAAQDVmDVPLLAVIPEDPVIREGTLEGIPAVKYKPESKGAQAFIKLAEEVDKLAGIKAKI 243
                            |       10        20        30        40  |     50        60        70    |   80        90       100       110       120       130|      140       150 |   | 160       170       180       190       200       210       220       230       240   
                            |                           30-MSE       43-MSE                          75-MSE                                              128-MSE                 152-MSE                              189-MSE                                                  
                            1-MSE                                                                                                                           131-MSE                  156-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1ION)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (O58346_PYRHO | O58346)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.

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