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(-) Description

Title :  CRYSTAL STRUCTURE OF CHAPERONIN-60 FROM PARACOCCUS DENITRIFICANS
 
Authors :  T. A. Fukami, M. Yohda, H. Taguchi, M. Yoshida, K. Miki
Date :  16 Mar 01  (Deposition) - 03 Oct 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym. Unit :  A,B,C,D,E,F,G
Biol. Unit 1:  A,B,C,D,E,F,G  (1x)
Biol. Unit 2:  A,B,C,D,E,F,G  (2x)
Keywords :  Chaperonin, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. A. Fukami, M. Yohda, H. Taguchi, M. Yoshida, K. Miki
Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans.
J. Mol. Biol. V. 312 501 2001
PubMed-ID: 11563912  |  Reference-DOI: 10.1006/JMBI.2001.4961
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CHAPERONIN 60
    Chains: A, B, C, D, E, F, G
    Organism Scientific: PARACOCCUS DENITRIFICANS
    Organism Taxid: 266

 Structural Features

(-) Chains, Units

  1234567
Asymmetric Unit : ABCDEFG
Biological Unit 1 (1x): ABCDEFG
Biological Unit 2 (2x): ABCDEFG

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1IOK)

(-) Sites  (0, 0)

(no "Site" information available for 1IOK)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1IOK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1IOK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1IOK)

(-) PROSITE Motifs  (1, 7)

Asymmetric Unit (1, 7)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CHAPERONINS_CPN60PS00296 Chaperonins cpn60 signature.CH60_PARDE405-416
 
 
 
 
 
 		  7A:405-416
B:405-416
C:405-416
D:405-416
E:405-416
F:405-416
G:405-416
Biological Unit 1 (1, 7)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CHAPERONINS_CPN60PS00296 Chaperonins cpn60 signature.CH60_PARDE405-416
 
 
 
 
 
 		  7A:405-416
B:405-416
C:405-416
D:405-416
E:405-416
F:405-416
G:405-416
Biological Unit 2 (1, 14)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CHAPERONINS_CPN60PS00296 Chaperonins cpn60 signature.CH60_PARDE405-416
 
 
 
 
 
 		  14A:405-416
B:405-416
C:405-416
D:405-416
E:405-416
F:405-416
G:405-416

(-) Exons   (0, 0)

(no "Exon" information available for 1IOK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:482
 aligned with CH60_PARDE | Q9Z462 from UniProtKB/Swiss-Prot  Length:545

    Alignment length:525
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521     
           CH60_PARDE     2 AAKEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKP 526
               SCOP domains d1ioka1 A:2-136,A:410-526 GroEL, E domain                                                                                              d1ioka3 A:137-190,A:367-409 GroEL, I domain           d1ioka2 A:191-366 GroEL, A domain                                                                                                                                               d1ioka3 A:137-190,A:367-409 GroEL, I domaind1ioka1 A:2-136,A:410-526 GroEL, E domain                                                                             SCOP domains
               CATH domains 1iokA01 A:2-137,A:411-526 GROEL, domain 1                                                                                               1iokA02 A:138-191,A:373-410 GROEL, domain 2           1iokA03 A:192-372 GroEL                                                                                                                                                              1iokA02 A:138-191,A:373-410           1iokA01 A:2-137,A:411-526 GROEL, domain 1                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeehhhhhhhhhhhhhhhhhhhhhhh.....eeee.......eee.hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhh...hhhhhhhhhhhhhhhh.......ee......eeeee..ee......hhhhh.......eeeeeeeeee..........-----------....eeee....-----------------.eeee.....hhhhhhhhhhhhhhh.---------------....eeeeeeee....eeee....hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh....eeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhheee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.....eeee....eeeehhhhh.eeehhhhhhhhhhhhhhhhhhhheeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CHAPERONINS_-------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1iok A   2 AAKEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQP-----------QKPLLIVAEDVE-----------------IAAVKAPGFGDRRKAMLQDIAILTGG---------------IDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKP 526
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231|        -  |    251   |     -         - |     281       291      |  -         -  |    321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521     
                                                                                                                                                                                                                                                                232         244        255               273                      298             314                                                                                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:482
 aligned with CH60_PARDE | Q9Z462 from UniProtKB/Swiss-Prot  Length:545

    Alignment length:525
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521     
           CH60_PARDE     2 AAKEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKP 526
               SCOP domains d1iokb1 B:2-136,B:410-526 GroEL, E domain                                                                                              d1iokb3 B:137-190,B:367-409 GroEL, I domain           d1iokb2 B:191-366 GroEL, A domain                                                                                                                                               d1iokb3 B:137-190,B:367-409 GroEL, I domaind1iokb1 B:2-136,B:410-526 GroEL, E domain                                                                             SCOP domains
               CATH domains 1iokB01 B:2-137,B:411-526 GROEL, domain 1                                                                                               1iokB02 B:138-191,B:373-410 GROEL, domain 2           1iokB03 B:192-372 GroEL                                                                                                                                                              1iokB02 B:138-191,B:373-410           1iokB01 B:2-137,B:411-526 GROEL, domain 1                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeehhhhhhhhhhhhhhhhhhhhhhh.....eeee.......eee.hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhh...hhhhhhhhhhhhhhhh.......ee......eeeee..ee......hhhhh.......eeeeeeeeee..........-----------....eeee....-----------------.eeee.....hhhhhhhhhhhhhhh.---------------....eeeeeeee....eeee....hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh....eeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhheee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.....eeee....eeeehhhhh.eeehhhhhhhhhhhhhhhhhhhheeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CHAPERONINS_-------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1iok B   2 AAKEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQP-----------QKPLLIVAEDVE-----------------IAAVKAPGFGDRRKAMLQDIAILTGG---------------IDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKP 526
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231|        -  |    251   |     -         - |     281       291      |  -         -  |    321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521     
                                                                                                                                                                                                                                                                232         244        255               273                      298             314                                                                                                                                                                                                                    


Chain C from PDB  Type:PROTEIN  Length:482
 aligned with CH60_PARDE | Q9Z462 from UniProtKB/Swiss-Prot  Length:545

    Alignment length:525
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521     
           CH60_PARDE     2 AAKEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKP 526
               SCOP domains d1iokc1 C:2-136,C:410-526 GroEL, E domain                                                                                              d1iokc3 C:137-190,C:367-409 GroEL, I domain           d1iokc2 C:191-366 GroEL, A domain                                                                                                                                               d1iokc3 C:137-190,C:367-409 GroEL, I domaind1iokc1 C:2-136,C:410-526 GroEL, E domain                                                                             SCOP domains
               CATH domains 1iokC01 C:2-137,C:411-526 GROEL, domain 1                                                                                               1iokC02 C:138-191,C:373-410 GROEL, domain 2           1iokC03 C:192-372 GroEL                                                                                                                                                              1iokC02 C:138-191,C:373-410           1iokC01 C:2-137,C:411-526 GROEL, domain 1                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeehhhhhhhhhhhhhhhhhhhhhhh.....eeee.......eee.hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhh...hhhhhhhhhhhhhhhh.......ee......eeeee..ee......hhhhh.......eeeeeeeeee..........-----------....eeee....-----------------.eeee.....hhhhhhhhhhhhhhh.---------------....eeeeeeee....eeee....hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh....eeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhheee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.....eeee....eeeehhhhh.eeehhhhhhhhhhhhhhhhhhhheeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CHAPERONINS_-------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1iok C   2 AAKEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQP-----------QKPLLIVAEDVE-----------------IAAVKAPGFGDRRKAMLQDIAILTGG---------------IDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKP 526
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231|        -  |    251   |     -         - |     281       291      |  -         -  |    321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521     
                                                                                                                                                                                                                                                                232         244        255               273                      298             314                                                                                                                                                                                                                    


Chain D from PDB  Type:PROTEIN  Length:482
 aligned with CH60_PARDE | Q9Z462 from UniProtKB/Swiss-Prot  Length:545

    Alignment length:525
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521     
           CH60_PARDE     2 AAKEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKP 526
               SCOP domains d1iokd1 D:2-136,D:410-526 GroEL, E domain                                                                                              d1iokd3 D:137-190,D:367-409 GroEL, I domain           d1iokd2 D:191-366 GroEL, A domain                                                                                                                                               d1iokd3 D:137-190,D:367-409 GroEL, I domaind1iokd1 D:2-136,D:410-526 GroEL, E domain                                                                             SCOP domains
               CATH domains 1iokD01 D:2-137,D:411-526 GROEL, domain 1                                                                                               1iokD02 D:138-191,D:373-410 GROEL, domain 2           1iokD03 D:192-372 GroEL                                                                                                                                                              1iokD02 D:138-191,D:373-410           1iokD01 D:2-137,D:411-526 GROEL, domain 1                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeehhhhhhhhhhhhhhhhhhhhhhh.....eeee.......eee.hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhh...hhhhhhhhhhhhhhhh.......ee......eeeee..ee......hhhhh.......eeeeeeeeee..........-----------....eeee....-----------------.eeee.....hhhhhhhhhhhhhhh.---------------....eeeeeeee....eeee....hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh....eeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhheee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.....eeee....eeeehhhhh.eeehhhhhhhhhhhhhhhhhhhheeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CHAPERONINS_-------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1iok D   2 AAKEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQP-----------QKPLLIVAEDVE-----------------IAAVKAPGFGDRRKAMLQDIAILTGG---------------IDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKP 526
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231|        -  |    251   |     -         - |     281       291      |  -         -  |    321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521     
                                                                                                                                                                                                                                                                232         244        255               273                      298             314                                                                                                                                                                                                                    


Chain E from PDB  Type:PROTEIN  Length:482
 aligned with CH60_PARDE | Q9Z462 from UniProtKB/Swiss-Prot  Length:545

    Alignment length:525
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521     
           CH60_PARDE     2 AAKEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKP 526
               SCOP domains d1ioke1 E:2-136,E:410-526 GroEL, E domain                                                                                              d1ioke3 E:137-190,E:367-409 GroEL, I domain           d1ioke2 E:191-366 GroEL, A domain                                                                                                                                               d1ioke3 E:137-190,E:367-409 GroEL, I domaind1ioke1 E:2-136,E:410-526 GroEL, E domain                                                                             SCOP domains
               CATH domains 1iokE01 E:2-137,E:411-526 GROEL, domain 1                                                                                               1iokE02 E:138-191,E:373-410 GROEL, domain 2           1iokE03 E:192-372 GroEL                                                                                                                                                              1iokE02 E:138-191,E:373-410           1iokE01 E:2-137,E:411-526 GROEL, domain 1                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeehhhhhhhhhhhhhhhhhhhhhhh.....eeee.......eee.hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhh...hhhhhhhhhhhhhhhh.......ee......eeeee..ee......hhhhh.......eeeeeeeeee..........-----------....eeee....-----------------.eeee.....hhhhhhhhhhhhhhh.---------------....eeeeeeee....eeee....hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh....eeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhheee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.....eeee....eeeehhhhh.eeehhhhhhhhhhhhhhhhhhhheeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CHAPERONINS_-------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1iok E   2 AAKEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQP-----------QKPLLIVAEDVE-----------------IAAVKAPGFGDRRKAMLQDIAILTGG---------------IDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKP 526
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231|        -  |    251   |     -         - |     281       291      |  -         -  |    321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521     
                                                                                                                                                                                                                                                                232         244        255               273                      298             314                                                                                                                                                                                                                    


Chain F from PDB  Type:PROTEIN  Length:482
 aligned with CH60_PARDE | Q9Z462 from UniProtKB/Swiss-Prot  Length:545

    Alignment length:525
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521     
           CH60_PARDE     2 AAKEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKP 526
               SCOP domains d1iokf1 F:2-136,F:410-526 GroEL, E domain                                                                                              d1iokf3 F:137-190,F:367-409 GroEL, I domain           d1iokf2 F:191-366 GroEL, A domain                                                                                                                                               d1iokf3 F:137-190,F:367-409 GroEL, I domaind1iokf1 F:2-136,F:410-526 GroEL, E domain                                                                             SCOP domains
               CATH domains 1iokF01 F:2-137,F:411-526 GROEL, domain 1                                                                                               1iokF02 F:138-191,F:373-410 GROEL, domain 2           1iokF03 F:192-372 GroEL                                                                                                                                                              1iokF02 F:138-191,F:373-410           1iokF01 F:2-137,F:411-526 GROEL, domain 1                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeehhhhhhhhhhhhhhhhhhhhhhh.....eeee.......eee.hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhh...hhhhhhhhhhhhhhhh.......ee......eeeee..ee......hhhhh.......eeeeeeeeee..........-----------....eeee....-----------------.eeee.....hhhhhhhhhhhhhhh.---------------....eeeeeeee....eeee....hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh....eeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhheee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.....eeee....eeeehhhhh.eeehhhhhhhhhhhhhhhhhhhheeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CHAPERONINS_-------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1iok F   2 AAKEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQP-----------QKPLLIVAEDVE-----------------IAAVKAPGFGDRRKAMLQDIAILTGG---------------IDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKP 526
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231|        -  |    251   |     -         - |     281       291      |  -         -  |    321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521     
                                                                                                                                                                                                                                                                232         244        255               273                      298             314                                                                                                                                                                                                                    


Chain G from PDB  Type:PROTEIN  Length:482
 aligned with CH60_PARDE | Q9Z462 from UniProtKB/Swiss-Prot  Length:545

    Alignment length:525
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521     
           CH60_PARDE     2 AAKEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKP 526
               SCOP domains d1iokg1 G:2-136,G:410-526 GroEL, E domain                                                                                              d1iokg3 G:137-190,G:367-409 GroEL, I domain           d1iokg2 G:191-366 GroEL, A domain                                                                                                                                               d1iokg3 G:137-190,G:367-409 GroEL, I domaind1iokg1 G:2-136,G:410-526 GroEL, E domain                                                                             SCOP domains
               CATH domains 1iokG01 G:2-137,G:411-526 GROEL, domain 1                                                                                               1iokG02 G:138-191,G:373-410 GROEL, domain 2           1iokG03 G:192-372 GroEL                                                                                                                                                              1iokG02 G:138-191,G:373-410           1iokG01 G:2-137,G:411-526 GROEL, domain 1                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeehhhhhhhhhhhhhhhhhhhhhhh.....eeee.......eee.hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhh...hhhhhhhhhhhhhhhh.......ee......eeeee..ee......hhhhh.......eeeeeeeeee..........-----------....eeee....-----------------.eeee.....hhhhhhhhhhhhhhh.---------------....eeeeeeee....eeee....hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh....eeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhheee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.....eeee....eeeehhhhh.eeehhhhhhhhhhhhhhhhhhhheeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CHAPERONINS_-------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1iok G   2 AAKEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQP-----------QKPLLIVAEDVE-----------------IAAVKAPGFGDRRKAMLQDIAILTGG---------------IDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKP 526
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231|        -  |    251   |     -         - |     281       291      |  -         -  |    321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521     
                                                                                                                                                                                                                                                                232         244        255               273                      298             314
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 21)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Fold: GroEL equatorial domain-like (23)
(-)
Superfamily: GroEL equatorial domain-like (23)
(-)
Family: GroEL chaperone, ATPase domain (15)
(-)
Protein domain: GroEL, E domain (15)
(-)
Paracoccus denitrificans [TaxId: 266] (1)
1ad1ioka1A:2-136,A:410-526
1bd1iokb1B:2-136,B:410-526
1cd1iokc1C:2-136,C:410-526
1dd1iokd1D:2-136,D:410-526
1ed1ioke1E:2-136,E:410-526
1fd1iokf1F:2-136,F:410-526
1gd1iokg1G:2-136,G:410-526
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Fold: GroEL-intermediate domain like (23)
(-)
Superfamily: GroEL-intermediate domain like (23)
(-)
Family: GroEL-like chaperone, intermediate domain (15)
(-)
Protein domain: GroEL, I domain (15)
(-)
Paracoccus denitrificans [TaxId: 266] (1)
2ad1ioka3A:137-190,A:367-409
2bd1iokb3B:137-190,B:367-409
2cd1iokc3C:137-190,C:367-409
2dd1iokd3D:137-190,D:367-409
2ed1ioke3E:137-190,E:367-409
2fd1iokf3F:137-190,F:367-409
2gd1iokg3G:137-190,G:367-409
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (3, 21)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 2-Layer Sandwich (8480)
(-)
Topology: GROEL; domain 2 (26)
(-)
Homologous Superfamily: GROEL, domain 2 (26)
(-)
Paracoccus denitrificans. Organism_taxid: 266 (1)
1a1iokA02A:138-191,A:373-410
1b1iokB02B:138-191,B:373-410
1c1iokC02C:138-191,C:373-410
1d1iokD02D:138-191,D:373-410
1e1iokE02E:138-191,E:373-410
1f1iokF02F:138-191,F:373-410
1g1iokG02G:138-191,G:373-410
(-)
Architecture: 3-Layer(bba) Sandwich (528)
(-)
Topology: GroEL (39)
(-)
Homologous Superfamily: GroEL (39)
(-)
Paracoccus denitrificans. Organism_taxid: 266 (1)
2a1iokA03A:192-372
2b1iokB03B:192-372
2c1iokC03C:192-372
2d1iokD03D:192-372
2e1iokE03E:192-372
2f1iokF03F:192-372
2g1iokG03G:192-372
(-)
Class: Mainly Alpha (13335)
(-)
Architecture: Orthogonal Bundle (10391)
(-)
Topology: GROEL; domain 1 (26)
(-)
Homologous Superfamily: GROEL, domain 1 (26)
(-)
Paracoccus denitrificans. Organism_taxid: 266 (1)
3a1iokA01A:2-137,A:411-526
3b1iokB01B:2-137,B:411-526
3c1iokC01C:2-137,C:411-526
3d1iokD01D:2-137,D:411-526
3e1iokE01E:2-137,E:411-526
3f1iokF01F:2-137,F:411-526
3g1iokG01G:2-137,G:411-526

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1IOK)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G   (CH60_PARDE | Q9Z462)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0051082    unfolded protein binding    Interacting selectively and non-covalently with an unfolded protein.
biological process
    GO:0006457    protein folding    The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
    GO:0042026    protein refolding    The process carried out by a cell that restores the biological activity of an unfolded or misfolded protein, using helper proteins such as chaperones.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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