Chain A from PDB Type:PROTEIN Length:182
aligned with HA21_MOUSE | P01904 from UniProtKB/Swiss-Prot Length:255
Alignment length:182
35 45 55 65 75 85 95 105 115 125 135 145 155 165 175 185 195 205
HA21_MOUSE 26 IKEEHTIIQAEFYLLPDKRGEFMFDFDGDEIFHVDIEKSETIWRLEEFAKFASFEAQGALANIAVDKANLDVMKERSNNTPDANVAPEVTVLSRSPVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYDCEVDHWGLEEPLRKTWEFEE 207
SCOP domains d1ieba2 A:1-81 Class II MHC alpha chain, N-terminal domain d1ieba1 A:82-182 Class II MHC alpha chain, C-terminal domain SCOP domains
CATH domains --1iebA01 A:3-81 1iebA02 A:82-181 Immunoglobulins - CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eeeeeeeeeee...eeeeeeee..eeeeeee....eeee..hhhhh......hhhhhhhhhhhhhhhhhhhh..............eee.........eeeeeee........eeeeee........eee............eeeeeee.......eeeeee.......eeeee.... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC --------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1ieb A 1 IKEEHTIIQAEFYLLPDKRGEFMFDFDGDEIFHVDIEKSETIWRLEEFAKFASFEAQGALANIAVDKANLDVMKERSNNTPDANVAPEVTVLSRSPVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYDCEVDHWGLEEPLRKTWEFEE 182
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180
Chain B from PDB Type:PROTEIN Length:214
aligned with Q31164_MOUSE | Q31164 from UniProtKB/TrEMBL Length:237
Alignment length:214
1 3 4
1 | - 4 14 24 34 44 54 64 74 84 94 104 114 124 134 144 154 164 174 184
Q31164_MOUSE - ---------ASF-----------------RPWFLEYCKSECHFYNGTQRVRLLVRYFYNLEENLRFDSDVGEFRAVTELGRPDAENWNSQPEFLEQKRAEVDTVCRHNYEIFDNFLVPRRVEPTVTVYPTKTQPLEHHNLLVCSVSDFYPGNIEVRWFRNGKEEKTGIVSTGLVRNGDWTFQTLVMLETVPQSGEVYTCQVEHPSLTDPVTVEW 188
SCOP domains -----------------------------d1iebb2 B:4-92 Class II MHC beta chain, N-terminal domain d1iebb1 B:93-188 Class II MHC beta chain, C-terminal domain SCOP domains
CATH domains 1iebB01 B:4N-93 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 1iebB02 B:94-188 Immunoglobulins CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ................................eeeeeeeeeee......eeeeeee.......eeee.....eee..hhhhhhhhhhhh.hhhhhhhhhhhhh.hhhhhhhhhh.........eeeee............eeeeeeee....eeeeeee........eee..........eeeeeee.........eeeeeee......eeeee Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1ieb B 4N RDRMVNHFIAEFKRKGGSLVPRGSGGGGSRPWFLEYCKSECHFYNGTQRVRLLVRYFYNLEENLRFDSDVGEFRAVTELGRPDAENWNSQPEFLEQKRAEVDTVCRHNYEIFDNFLVPRRVEPTVTVYPTKTQPLEHHNLLVCSVSDFYPGNIEVRWFRNGKEEKTGIVSTGLVRNGDWTFQTLVMLETVPQSGEVYTCQVEHPSLTDPVTVEW 188
||||||||6P||||||||7L|||||||||4 14 24 34 44 54 64 74 84 94 104 114 124 134 144 154 164 174 184
4N|||||||6P|||||||6L||||||15L||
5N|||||||7P|||||||7L||||||16L|
6N|||||| 8P|||||| 8L|||||| 4
7N||||| 9P||||| 9L|||||
1P|||| 1L|||| 10L||||
2P||| 2L||| 11L|||
3P|| 3L|| 12L||
4P| 4L| 13L|
5P 5L 14L
Chain C from PDB Type:PROTEIN Length:182
aligned with HA21_MOUSE | P01904 from UniProtKB/Swiss-Prot Length:255
Alignment length:182
35 45 55 65 75 85 95 105 115 125 135 145 155 165 175 185 195 205
HA21_MOUSE 26 IKEEHTIIQAEFYLLPDKRGEFMFDFDGDEIFHVDIEKSETIWRLEEFAKFASFEAQGALANIAVDKANLDVMKERSNNTPDANVAPEVTVLSRSPVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYDCEVDHWGLEEPLRKTWEFEE 207
SCOP domains d1iebc2 C:1-81 Class II MHC alpha chain, N-terminal domain d1iebc1 C:82-182 Class II MHC alpha chain, C-terminal domain SCOP domains
CATH domains --1iebC01 C:3-81 1iebC02 C:82-181 Immunoglobulins - CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eeeeeeeeeee...eeeeeeee..eeeeeee....eeee..hhhhh......hhhhhhhhhhhhhhhhhhhh...........eeeeee........eeeeeeeee......eeeeeee........eee............eeeeeeee......eeeeeee......eeeee.... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC --------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1ieb C 1 IKEEHTIIQAEFYLLPDKRGEFMFDFDGDEIFHVDIEKSETIWRLEEFAKFASFEAQGALANIAVDKANLDVMKERSNNTPDANVAPEVTVLSRSPVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYDCEVDHWGLEEPLRKTWEFEE 182
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180
Chain D from PDB Type:PROTEIN Length:214
aligned with Q31164_MOUSE | Q31164 from UniProtKB/TrEMBL Length:237
Alignment length:214
1 3 4
1 | - 4 14 24 34 44 54 64 74 84 94 104 114 124 134 144 154 164 174 184
Q31164_MOUSE - ---------ASF-----------------RPWFLEYCKSECHFYNGTQRVRLLVRYFYNLEENLRFDSDVGEFRAVTELGRPDAENWNSQPEFLEQKRAEVDTVCRHNYEIFDNFLVPRRVEPTVTVYPTKTQPLEHHNLLVCSVSDFYPGNIEVRWFRNGKEEKTGIVSTGLVRNGDWTFQTLVMLETVPQSGEVYTCQVEHPSLTDPVTVEW 188
SCOP domains -----------------------------d1iebd2 D:4-92 Class II MHC beta chain, N-terminal domain d1iebd1 D:93-188 Class II MHC beta chain, C-terminal domain SCOP domains
CATH domains 1iebD01 D:4N-93 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 1iebD02 D:94-188 Immunoglobulins CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ................................eeeeeeeeeee......eeeeeeeee..eeeeeee.....eee..hhhhhhhhhhhh.hhhhhhhhhhhhh.hhhhhhhhhh.........eeeeee...........eeeeee......eeeeeee........eee..............eee.........eeeeeee......eeeee Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1ieb D 4N RDRMVNHFIAEFKRKGGSLVPRGSGGGGSRPWFLEYCKSECHFYNGTQRVRLLVRYFYNLEENLRFDSDVGEFRAVTELGRPDAENWNSQPEFLEQKRAEVDTVCRHNYEIFDNFLVPRRVEPTVTVYPTKTQPLEHHNLLVCSVSDFYPGNIEVRWFRNGKEEKTGIVSTGLVRNGDWTFQTLVMLETVPQSGEVYTCQVEHPSLTDPVTVEW 188
||||||||6P||||||||7L|||||||||4 14 24 34 44 54 64 74 84 94 104 114 124 134 144 154 164 174 184
4N|||||||6P|||||||6L||||||15L||
5N|||||||7P|||||||7L||||||16L|
6N|||||| 8P|||||| 8L|||||| 4
7N||||| 9P||||| 9L|||||
1P|||| 1L|||| 10L||||
2P||| 2L||| 11L|||
3P|| 3L|| 12L||
4P| 4L| 13L|
5P 5L 14L
Legend: |
|
→ Mismatch |
(orange background) |
|
- |
→ Gap |
(green background, '-', border residues have a numbering label) |
|
|
→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
|
x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
|
extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |