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(-) Description

Title :  EQUINATOXIN II
 
Authors :  A. Athanasiadis, G. Anderluh, P. Macek, D. Turk
Date :  24 Mar 01  (Deposition) - 04 Apr 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Beta-Sandwich, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Athanasiadis, G. Anderluh, P. Macek, D. Turk
Crystal Structure Of The Soluble Form Of Equinatoxin Ii, A Pore-Forming Toxin From The Sea Anemone Actinia Equina.
Structure V. 9 341 2001
PubMed-ID: 11525171  |  Reference-DOI: 10.1016/S0969-2126(01)00592-5
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - EQUINATOXIN II
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism ScientificACTINIA EQUINA
    Organism Taxid6106
    SynonymEQTII, TENEBROSIN C

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 11)

Asymmetric/Biological Unit (1, 11)
No.NameCountTypeFull Name
1SO411Ligand/IonSULFATE ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:123 , HOH A:488 , ARG B:120 , TYR B:122 , LYS B:123BINDING SITE FOR RESIDUE SO4 A 400
02AC2SOFTWAREARG A:120 , TYR A:122 , LYS A:123 , HOH A:436 , HOH A:457 , HOH A:460 , ARG B:120BINDING SITE FOR RESIDUE SO4 A 401
03AC3SOFTWAREASN B:147 , ASN B:165 , SER B:166 , SER B:167 , HOH B:412BINDING SITE FOR RESIDUE SO4 B 402
04AC4SOFTWARELYS A:30 , HOH A:480 , HOH A:555 , ARG B:53 , GLN B:130 , TYR B:133 , TYR B:138 , HOH B:508 , HOH B:561BINDING SITE FOR RESIDUE SO4 B 403
05AC5SOFTWARESER B:15 , PHE B:16 , ASN B:49 , GLU B:173 , HOH B:410 , HOH B:436 , HOH B:440 , HOH B:498 , HOH B:519 , HOH B:520 , HOH B:580BINDING SITE FOR RESIDUE SO4 B 404
06AC6SOFTWAREARG A:126 , ASP A:129 , ARG A:131 , HOH A:451 , ARG B:152BINDING SITE FOR RESIDUE SO4 A 405
07AC7SOFTWAREASN A:28 , VAL A:29 , LYS A:30 , LYS A:77 , HOH A:555 , TYR B:113 , TYR B:138BINDING SITE FOR RESIDUE SO4 A 406
08AC8SOFTWAREARG A:53 , TRP A:116 , TYR A:137 , HOH A:544BINDING SITE FOR RESIDUE SO4 A 407
09AC9SOFTWAREASN A:49 , ARG A:127 , ASN A:153 , HOH A:478 , HOH A:484BINDING SITE FOR RESIDUE SO4 A 408
10BC1SOFTWARELYS B:125 , ARG B:127 , ARG B:161 , HIS B:175 , SER B:177 , HOH B:450 , HOH B:523 , HOH B:581BINDING SITE FOR RESIDUE SO4 B 409
11BC2SOFTWAREARG A:53 , GLN A:130 , TYR A:133 , TYR A:138 , ARG A:144 , HOH A:508BINDING SITE FOR RESIDUE SO4 A 410

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1IAZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1IAZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 2)

Asymmetric/Biological Unit (1, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_ACTP2_ACTEQ_001 *P116DACTP2_ACTEQ  ---  ---A/BP81D
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1IAZ)

(-) Exons   (0, 0)

(no "Exon" information available for 1IAZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:175
 aligned with ACTP2_ACTEQ | P61914 from UniProtKB/Swiss-Prot  Length:214

    Alignment length:175
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209     
          ACTP2_ACTEQ    40 AGAVIDGASLSFDILKTVLEALGNVKRKIAVGVDNESGKTWTALNTYFRSGTSDIVLPHKVPHGKALLYNGQKDRGPVATGAVGVLAYLMSDGNTLAVLFSVPYDYNWYSNWWNVRIYKGKRRADQRMYEELYYNLSPFRGDNGWHTRNLGYGLKSRGFMNSSGHAILEIHVSKA 214
               SCOP domains d1iaza_ A: Equinatoxin II (eqtII, tenebrosin C)                                                                                                                                 SCOP domains
               CATH domains 1iazA00 A:5-179  [code=2.60.270.20, no name defined]                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.hhhhhhhhhhhhhhh.....eeeeeeeee....eeeeeeeeee.........ee...eeeeeeee.........eeeeeeeee....eeeeeeee.........eeeeeee......hhhhhhhhhhh...ee...eeeeeeee..eeeeeee....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------D-------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1iaz A   5 AGAVIDGASLSFDILKTVLEALGNVKRKIAVGVDNESGKTWTALNTYFRSGTSDIVLPHKVPHGKALLYNGQKDRGPVATGAVGVLAYLMSDGNTLAVLFSVPYDYNWYSNWWNVRIYKGKRRADQRMYEELYYNLSPFRGDNGWHTRNLGYGLKSRGFMNSSGHAILEIHVSKA 179
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174     

Chain B from PDB  Type:PROTEIN  Length:175
 aligned with ACTP2_ACTEQ | P61914 from UniProtKB/Swiss-Prot  Length:214

    Alignment length:175
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209     
          ACTP2_ACTEQ    40 AGAVIDGASLSFDILKTVLEALGNVKRKIAVGVDNESGKTWTALNTYFRSGTSDIVLPHKVPHGKALLYNGQKDRGPVATGAVGVLAYLMSDGNTLAVLFSVPYDYNWYSNWWNVRIYKGKRRADQRMYEELYYNLSPFRGDNGWHTRNLGYGLKSRGFMNSSGHAILEIHVSKA 214
               SCOP domains d1iazb_ B: Equinatoxin II (eqtII, tenebrosin C)                                                                                                                                 SCOP domains
               CATH domains 1iazB00 B:5-179  [code=2.60.270.20, no name defined]                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.hhhhhhhhhhhhhhh.....eeeeeeeee....eeeeeeeeee.........ee...eeeeeeee.........eeeeeeeee....eeeeeeee.........eeeeeee......hhhhhhhhhhh...ee....eeeeeee..eeeeeee....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------D-------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1iaz B   5 AGAVIDGASLSFDILKTVLEALGNVKRKIAVGVDNESGKTWTALNTYFRSGTSDIVLPHKVPHGKALLYNGQKDRGPVATGAVGVLAYLMSDGNTLAVLFSVPYDYNWYSNWWNVRIYKGKRRADQRMYEELYYNLSPFRGDNGWHTRNLGYGLKSRGFMNSSGHAILEIHVSKA 179
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174     

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1IAZ)

(-) Gene Ontology  (16, 16)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (ACTP2_ACTEQ | P61914)
molecular function
    GO:0015267    channel activity    Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules.
biological process
    GO:0006812    cation transport    The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0019835    cytolysis    The rupture of cell membranes and the loss of cytoplasm.
    GO:0044179    hemolysis in other organism    The cytolytic destruction of red blood cells, with the release of intracellular hemoglobin, in one organism by another.
    GO:0052331    hemolysis in other organism involved in symbiotic interaction    The cytolytic destruction of red blood cells, with the release of intracellular hemoglobin, in one organism by another, where two organisms are in a symbiotic interaction.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0046931    pore complex assembly    The aggregation, arrangement and bonding together of a set of components to form a pore complex. A pore complex is a small opening in a membrane that allows the passage of liquids and/or gases.
    GO:0055085    transmembrane transport    The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0042151    nematocyst    An organelle found in cnidoblast (nematoblast) cells. When matured, these stinging organelles store toxins and can deliver them when the cnidocil (a short extension of the cnidocyst) is stimulated by a prey or another stimulus.
    GO:0044218    other organism cell membrane    The cell membrane of a secondary organism with which the first organism is interacting.
    GO:0044279    other organism membrane    A membrane of a secondary organism with which the first organism is interacting.
    GO:0046930    pore complex    Any small opening in a membrane that allows the passage of gases and/or liquids.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        ACTP2_ACTEQ | P619141kd6 1tzq

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