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(-) Description

Title :  ANTHRANILATE SYNTHASE FROM SERRATIA MARCESCENS IN COMPLEX WITH ITS END PRODUCT INHIBITOR L-TRYPTOPHAN
 
Authors :  G. Spraggon, C. Kim, X. Nguyen-Huu, M. -C. Yee, C. Yanofsky, S. E. Mills
Date :  10 Mar 01  (Deposition) - 16 May 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Anthranilate Synthase, End Product Inhibition, Tryptophan Binding, Conformational Change, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  G. Spraggon, C. Kim, X. Nguyen-Huu, M. C. Yee, C. Yanofsky, S. E. Mills
The Structures Of Anthranilate Synthase Of Serratia Marcescens Crystallized In The Presence Of (I) Its Substrates, Chorismate And Glutamine, And A Product, Glutamate, And (Ii) Its End-Product Inhibitor, L-Tryptophan.
Proc. Natl. Acad. Sci. Usa V. 98 6021 2001
PubMed-ID: 11371633  |  Reference-DOI: 10.1073/PNAS.111150298
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ANTHRANILATE SYNTHASE
    ChainsA, C
    EC Number4.1.3.27
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism ScientificSERRATIA MARCESCENS
    Organism Taxid615
    SynonymANTHRANILATE SYNTHASE TRPE
 
Molecule 2 - TRPG
    ChainsB, D
    EC Number4.1.3.27
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism ScientificSERRATIA MARCESCENS
    Organism Taxid615
    SynonymANTHRANILATE SYNTHASE TRPG

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1TRP2Mod. Amino AcidTRYPTOPHAN

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:38 , GLU A:39 , SER A:40 , LEU A:49 , GLN A:50 , PRO A:291 , TYR A:292 , MET A:293 , VAL A:453 , GLY A:454 , TYR A:455 , ASP A:463BINDING SITE FOR RESIDUE TRP A 601
2AC2SOFTWARELEU C:38 , GLU C:39 , SER C:40 , LEU C:49 , GLN C:50 , PRO C:291 , TYR C:292 , MET C:293 , VAL C:453 , ASP C:463 , CYS C:465BINDING SITE FOR RESIDUE TRP C 701

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1I7S)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Ala A:429 -Pro A:430
2Asn B:126 -Pro B:127
3Ala C:429 -Pro C:430
4Asn D:126 -Pro D:127

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1I7S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1I7S)

(-) Exons   (0, 0)

(no "Exon" information available for 1I7S)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:511
 aligned with TRPE_SERMA | P00897 from UniProtKB/Swiss-Prot  Length:519

    Alignment length:517
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       
           TRPE_SERMA     3 TKPQLTLLKVQASYRGDPTTLFHQLCGARPATLLLESAEINDKQNLQSLLVIDSALPITALGHTVSVQALTANGPALLPVLDEALPPEVRNQARPNGRELTFPAIDAVQDEDARLRSLSVFDALRTLLTLVDSPADEREAVMLGGLFAYDLVAGFENLPAVRQDQRCPDFCFYLAETLLVLDHQRGSARLQASVFSEQASEAQRLQHRLEQLQAELQQPPQPIPHQKLENMQLSCNQSDEEYGAVVSELQEAIRQGEIFQVVPSRRFSLPCPAPLGPYQTLKDNNPSPYMFFMQDDDFTLFGASPESALKYDAGNRQIEIYPIAGTRPRGRRADGSLDLDLDSRIELEMRTDHKELAEHLMLVDLARNDLARICQAGSRYVADLTKVDRYSFVMHLVSRVVGTLRADLDVLHAYQACMNMGTLSGAPKVRAMQLIAALRSTRRGSYGGRVGYFTAHRHLDTCIVIRSAYVEDGHRTVQAGAGVVQDSIRRREADETRNKARAVLRAIATAHHAKEVF 519
               SCOP domains d1i7sa_ A: Anthranilate synthase aminod      eoxyisochorismate synthase/lyase subunit, TrpE                                                                                                                                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1i7sA00 A:4-520 Anthranilate synthase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee.....hhhhhhhhhh....eeeee...------..eeeeeeeeeeeeee..eeeeee......hhhhhhhhhh....eeeee..eeeee........hhhhhhhh..hhhhhhhhh.............eeeeee.hhhhhhh..............eeeeeeeeeeeee....eeeeeeee...hhhhhhhhhhhhhhhhhhh.................ee..hhhhhhhhhhhhhhhhhh....ee..eeeeeee...hhhhhhhhhhhh...eeeeee....eeeeee..eeeee.....eeee..eeeeee.........hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.......eeeeeeeeee...eeeeeeeeeee.....hhhhhhhhhh.hhhh.eehhhhhhhhhhhhhh........eeeeee....eeeee...eeeee..eeeeeee.......hhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1i7s A   4 TKPQLTLLKVQASYRGDPTTLFHQLCGARPATLLLESAE------LQSLLVIDSALRITALGHTVSVQALTANGPALLPLLDEALPPEVRNQARPNGRELTFPAIDAVQDEDARLRSLSVFDALRTILTLVDSPADEREAVMLGGLFAYDLVAGFENLPALRQDQRCPDFCFYLAETLLVLDHQRGSARLQASVFSEQASEAQRLQHRLEQLQAELQQPPQPIPHQKLENMQLSCNQSDEEYGAVVSELQEAIRQGEIFQVVPSRRFSLPCPAPLGPYQTLKDNNPSPYMFFMQDDDFTLFGASPESALKYDAGNRQIEIYPIAGTRPRGRRADGSLDLDLDSRIELEMRTDHKELAEHLMLVDLARNDLARICQAGSRYVADLTKVDRYSFVMHLVSRVVGTLRADLDVLHAYQACMNMGTLSGAPKVRAMQLIAALRSTRRGSYGGRVGYFTAVRNLDTCIVIRSAYVEDGHRTVQAGAGVVQDSIPEREADETRNKARAVLRAIATAHHAKEVF 520
                                    13        23        33        |-     |  53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       
                                                                 42     49                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       

Chain B from PDB  Type:PROTEIN  Length:192
 aligned with TRPG_SERMA | P00900 from UniProtKB/Swiss-Prot  Length:193

    Alignment length:192
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191  
           TRPG_SERMA     2 ADILLLDNVDSFTYNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSEAGCMPELLQRLRGQLPIIGICLGHQAIVEAYGGQVGQAGEILHGKASAIAHDGEGMFAGMANPLPVARYHSLVGSNIPADLTVNARSGEMVMAVRDDRRRVCGFQFHPESILTTHGARLLEQTLAWALAK 193
               SCOP domains d1i7sb_ B: Anthranilate synthase GAT subunit, TrpG                                                                                                                                               SCOP domains
               CATH domains 1i7sB00 B:2-195  [code=3.40.50.880, no name defined]                                                                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhhhh..eeeeee...hhhhhhhhhh....eeeee.....hhhhh.hhhhhhhhhh....eeeehhhhhhhhhhh...............eeeee..hhhhh.....eee...............eeeeee..eeeeeee....eeee..........hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1i7s B   2 ADILLLDNVDSFTYNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSEAGCMPELLQRLRGQLPIIGICLGHQAIVEAYGGQVGQAGEILHGKASAIAHDGEGMFAGMANPLPVARYHSLVGSNIPADLTVNARFGEMVMAVRDDRRRVCGFQFHPESILTTHGARLLEQTLAWALAK 195
                                    11        21        31        41     || 52        62        72        82        92       102       112       122       132       142||     153       163       173       183       193  
                                                                        47|                                                                                           143|                                                  
                                                                         49                                                                                            145                                                  

Chain C from PDB  Type:PROTEIN  Length:511
 aligned with TRPE_SERMA | P00897 from UniProtKB/Swiss-Prot  Length:519

    Alignment length:517
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       
           TRPE_SERMA     3 TKPQLTLLKVQASYRGDPTTLFHQLCGARPATLLLESAEINDKQNLQSLLVIDSALPITALGHTVSVQALTANGPALLPVLDEALPPEVRNQARPNGRELTFPAIDAVQDEDARLRSLSVFDALRTLLTLVDSPADEREAVMLGGLFAYDLVAGFENLPAVRQDQRCPDFCFYLAETLLVLDHQRGSARLQASVFSEQASEAQRLQHRLEQLQAELQQPPQPIPHQKLENMQLSCNQSDEEYGAVVSELQEAIRQGEIFQVVPSRRFSLPCPAPLGPYQTLKDNNPSPYMFFMQDDDFTLFGASPESALKYDAGNRQIEIYPIAGTRPRGRRADGSLDLDLDSRIELEMRTDHKELAEHLMLVDLARNDLARICQAGSRYVADLTKVDRYSFVMHLVSRVVGTLRADLDVLHAYQACMNMGTLSGAPKVRAMQLIAALRSTRRGSYGGRVGYFTAHRHLDTCIVIRSAYVEDGHRTVQAGAGVVQDSIRRREADETRNKARAVLRAIATAHHAKEVF 519
               SCOP domains d1i7sc_ C: Anthranilate synthase aminod      eoxyisochorismate synthase/lyase subunit, TrpE                                                                                                                                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1i7sC00 C:4-520 Anthranilate synthase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee.....hhhhhhhhhh....eeeee...------..eeeeeeeeeeeeee..eeeeee......hhhhhhhhhh....eeeee..eeeee........hhhhhhhh...hhhhhhhhh............eeeeee.hhhhhhh..............eeeeeeeeeeeee....eeeeeeee...hhhhhhhhhhhhhhhhh...................ee..hhhhhhhhhhhhhhhhhh....ee..eeeeeee...hhhhhhhhhhhh...eeeeee....eeeeee..eeeee.....eeee..eeeeee.........hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.......eeeeeeeeee...eeeeeeeeeee.....hhhhhhhhh..hhhh.eehhhhhhhhhhhhhh........eeeeee....eeeee...eeeee..eeeeeee.......hhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1i7s C   4 TKPQLTLLKVQASYRGDPTTLFHQLCGARPATLLLESAE------LQSLLVIDSALRITALGHTVSVQALTANGPALLPLLDEALPPEVRNQARPNGRELTFPAIDAVQDEDARLRSLSVFDALRTILTLVDSPADEREAVMLGGLFAYDLVAGFENLPALRQDQRCPDFCFYLAETLLVLDHQRGSARLQASVFSEQASEAQRLQHRLEQLQAELQQPPQPIPHQKLENMQLSCNQSDEEYGAVVSELQEAIRQGEIFQVVPSRRFSLPCPAPLGPYQTLKDNNPSPYMFFMQDDDFTLFGASPESALKYDAGNRQIEIYPIAGTRPRGRRADGSLDLDLDSRIELEMRTDHKELAEHLMLVDLARNDLARICQAGSRYVADLTKVDRYSFVMHLVSRVVGTLRADLDVLHAYQACMNMGTLSGAPKVRAMQLIAALRSTRRGSYGGRVGYFTAVRNLDTCIVIRSAYVEDGHRTVQAGAGVVQDSIPEREADETRNKARAVLRAIATAHHAKEVF 520
                                    13        23        33        |-     |  53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       
                                                                 42     49                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       

Chain D from PDB  Type:PROTEIN  Length:192
 aligned with TRPG_SERMA | P00900 from UniProtKB/Swiss-Prot  Length:193

    Alignment length:192
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191  
           TRPG_SERMA     2 ADILLLDNVDSFTYNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSEAGCMPELLQRLRGQLPIIGICLGHQAIVEAYGGQVGQAGEILHGKASAIAHDGEGMFAGMANPLPVARYHSLVGSNIPADLTVNARSGEMVMAVRDDRRRVCGFQFHPESILTTHGARLLEQTLAWALAK 193
               SCOP domains d1i7sd_ D: Anthranilate synthase GAT subunit, TrpG                                                                                                                                               SCOP domains
               CATH domains 1i7sD00 D:2-195  [code=3.40.50.880, no name defined]                                                                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhhhh..eeeeee...hhhhhhhhhhh...eeeee.....hhhhh.hhhhhhhhhh....eeeehhhhhhhhhhh...............eeeee..hhhhh.....eee...............eeeee....eeeeee....eeee..........hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1i7s D   2 ADILLLDNVDSFTYNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSEAGCMPELLQRLRGQLPIIGICLGHQAIVEAYGGQVGQAGEILHGKASAIAHDGEGMFAGMANPLPVARYHSLVGSNIPADLTVNARFGEMVMAVRDDRRRVCGFQFHPESILTTHGARLLEQTLAWALAK 195
                                    11        21        31        41     || 52        62        72        82        92       102       112       122       132       142||     153       163       173       183       193  
                                                                        47|                                                                                           143|                                                  
                                                                         49                                                                                            145                                                  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit

(-) CATH Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1I7S)

(-) Gene Ontology  (11, 17)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,C   (TRPE_SERMA | P00897)
molecular function
    GO:0004049    anthranilate synthase activity    Catalysis of the reaction: chorismate + L-glutamine = anthranilate + pyruvate + L-glutamate.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016833    oxo-acid-lyase activity    Catalysis of the cleavage of a C-C bond by other means than by hydrolysis or oxidation, of a 3-hydroxy acid.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0009073    aromatic amino acid family biosynthetic process    The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
    GO:0009058    biosynthetic process    The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
    GO:0008652    cellular amino acid biosynthetic process    The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
    GO:0000162    tryptophan biosynthetic process    The chemical reactions and pathways resulting in the formation of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid; tryptophan is synthesized from chorismate via anthranilate.

Chain B,D   (TRPG_SERMA | P00900)
molecular function
    GO:0004049    anthranilate synthase activity    Catalysis of the reaction: chorismate + L-glutamine = anthranilate + pyruvate + L-glutamate.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0009073    aromatic amino acid family biosynthetic process    The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
    GO:0008652    cellular amino acid biosynthetic process    The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
    GO:0006541    glutamine metabolic process    The chemical reactions and pathways involving glutamine, 2-amino-4-carbamoylbutanoic acid.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0000162    tryptophan biosynthetic process    The chemical reactions and pathways resulting in the formation of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid; tryptophan is synthesized from chorismate via anthranilate.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TRPE_SERMA | P008971i7q
        TRPG_SERMA | P009001i7q

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1I7S)