Asymmetric/Biological Unit
Chain A from PDB Type:PROTEIN Length:620
aligned with TOP3_ECOLI | P14294 from UniProtKB/Swiss-Prot Length:653
Alignment length:620
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620
TOP3_ECOLI 1 MRLFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQVVTWCIGHLLEQAQPDAYDSRYARWNLADLPIVPEKWQLQPRPSVTKQLNVIKRFLHEASEIVHAGDPDREGQLLVDEVLDYLQLAPEKRQQVQRCLINDLNPQAVERAIDRLRSNSEFVPLCVSALARARADWLYGINMTRAYTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERFTAIWQPSEACEPYQDEEGRLLHRPLAEHVVNRISGQPAIVTSYNDKRESESAPLPFSLSALQIEAAKRFGLSAQNVLDICQKLYETHKLITYPRSDCRYLPEEHFAGRHAVMNAISVHAPDLLPQPVVDPDIRNRCWDDKKVDAHHAIIPTARSSAINLTENEAKVYNLIARQYLMQFCPDAVFRKCVIELDIAKGKFVAKARFLAEAGWRTLLGSKERDEENDGTPLPVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRAGIIELLFKRGFLTKKGRYIHSTDAGKALFHSLPEMATRPDMTAHWESVLTQISEKQCRYQDFMQPLVGTLYQLIDQAKRTPVRQFRGIVAP 620
SCOP domains d1i7da_ A: DNA topoisomerase III SCOP domains
CATH domains 1i7dA01 A:1-156 [code=3.40.50.140, no name defined] 1i7dA02 A:157-216,A:489-608 Topoisomerase I, domain 2 -1i7dA03 A:218-287,A:418-488 Topoisomerase I, domain 3 --1i7dA04 A:290-416 Topoisomerase I, domain 4 -1i7dA03 A:218-287,A:418-488 Topoisomerase I, domain 3 1i7dA02 A:157-216,A:489-608 Topoisomerase I, domain 2 ------------ CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeee.hhhhhhhhhh......eee..eeee...eeeee.....eee.hhhhhhhhhhh..............eee...hhhhhhhhhhhhhhh.eeeee...hhhhhhhhhhhhhhh..hhhhhhh.ee......hhhhhhhhhh..ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhh....eeeeeeeeee.....eeeeee..hhhhh..........hhhhhhhhhhhhh..eee..eeeeeeeee......hhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhh..................hhhhh.................hhhhhhhhhhhhhhhhhh....eeeeeeeeee......eee.eeeeeehhhhhhh..hhhhh..ee..........eeeeeeeeeeeee......eehhhhhhhhhhhhhhh.hhhhhhhhhhh.......hhhhhhhhhhhh..eee...eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhh..... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE TOPRIM PDB: A:1-134 UniProt: 1-134 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TOPOISOMERASE_I_------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1i7d A 1 MRLFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQVVTWCIGHLLEQAQPDAYDSRYARWNLADLPIVPEKWQLQPRPSVTKQLNVIKRFLHEASEIVHAGDPDREGQLLVDEVLDYLQLAPEKRQQVQRCLINDLNPQAVERAIDRLRSNSEFVPLCVSALARARADWLYGINMTRAYTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERFTAIWQPSEACEPYQDEEGRLLHRPLAEHVVNRISGQPAIVTSYNDKRESESAPLPFSLSALQIEAAKRFGLSAQNVLDICQKLYETHKLITFPRSDCRYLPEEHFAGRHAVMNAISVHAPDLLPQPVVDPDIRNRCWDDKKVDAHHAIIPTARSSAINLTENEAKVYNLIARQYLMQFCPDAVFRKCVIELDIAKGKFVAKARFLAEAGWRTLLGSKERDEENDGTPLPVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRAGIIELLFKRGFLTKKGRYIHSTDAGKALFHSLPEMATRPDMTAHWESVLTQISEKQCRYQDFMQPLVGTLYQLIDQAKRTPVRQFRGIVAP 620
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620
Chain B from PDB Type:DNA Length:8
1i7d B 701 CGCAACTT 708
Legend: |
|
→ Mismatch |
(orange background) |
|
- |
→ Gap |
(green background, '-', border residues have a numbering label) |
|
|
→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
|
x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
|
extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |
|