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(-) Description

Title :  SOLUTION STRUCTURES OF C-1027 APOPROTEIN AND ITS COMPLEX WITH THE AROMATIZED CHROMOPHORE
 
Authors :  T. Tanaka, S. Fukuda-Ishisaka, M. Hirama, T. Otani
Date :  25 Jan 01  (Deposition) - 23 May 01  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (30x)
Keywords :  Chromoprotein, C-1027, Apoprotein, Antibiotic (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Tanaka, S. Fukuda-Ishisaka, M. Hirama, T. Otani
Solution Structures Of C-1027 Apoprotein And Its Complex With The Aromatized Chromophore.
J. Mol. Biol. V. 309 267 2001
PubMed-ID: 11491295  |  Reference-DOI: 10.1006/JMBI.2001.4621
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - C-1027 APOPROTEIN
    Chains: A
    Organism Scientific: STREPTOMYCES GLOBISPORUS
    Organism Taxid: 1908
    Strain: C-1027
    Synonym: ANTITUMOR ANTIBIOTIC C-1027 APOPROTEIN

 Structural Features

(-) Chains, Units

  
NMR Structure (30x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1HZK)

(-) Sites  (0, 0)

(no "Site" information available for 1HZK)

(-) SS Bonds  (2, 2)

NMR Structure
No.Residues
1A:36 -A:45
2A:86 -A:91

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1HZK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1HZK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1HZK)

(-) Exons   (0, 0)

(no "Exon" information available for 1HZK)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:110
 aligned with CAGA_STRGL | Q06110 from UniProtKB/Swiss-Prot  Length:143

    Alignment length:110
                                    43        53        63        73        83        93       103       113       123       133       143
           CAGA_STRGL    34 APAFSVSPASGLSDGQSVSVSVSGAAAGETYYIAQCAPVGGQDACNPATATSFTTDASGAASFSFVVRKSYTGSTPEGTPVGSVDCATAACNLGAGNSGLDLGHVALTFG 143
               SCOP domains d1hzka_ A: Antitumor antibiotic C-1027                                                                         SCOP domains
               CATH domains 1hzkA00 A:1-110  [code=2.60.40.230, no name defined]                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..........eeeeeee......eeeeeeeee....eee.....eeee.....eeeeeee...eeee........eeee.....eeeeee......eeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 1hzk A   1 APAFSVSPASGLSDGQSVSVSVSGAAAGETYYIAQCAPVGGQDACNPATATSFTTDASGAASFSFVVRKSYTGSTPEGTPVGSVDCATAACNLGAGNSGLDLGHVALTFG 110
                                    10        20        30        40        50        60        70        80        90       100       110
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1HZK)

(-) Gene Ontology  (3, 3)

NMR Structure(hide GO term definitions)
Chain A   (CAGA_STRGL | Q06110)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
biological process
    GO:0006952    defense response    Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CAGA_STRGL | Q06110: 1hzl 1j48

(-) Related Entries Specified in the PDB File

4946 4946 CONTAINS 1H RESONANCE ASSIGNMENTS OF C-1027 APOPROTEIN.
1hzl 1HZL IS C-1027 APOPROTEIN COMPLEXED WITH THE AROMATIZED CHROMOPHORE.