1HYL - JenaLib

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Title :   THE 1.8 A STRUCTURE OF COLLAGENASE FROM HYPODERMA LINEATUM

Authors :   I. Broutin, B. Arnoux, C. Riche, A. Lecroisey, B. Keil, C. Pascard, A. Ducruix

Date :   02 May 95 (Deposition) - 31 Jul 95 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (2x)

Keywords :   Hydrolase (Serine Protease) (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   I. Broutin, B. Arnoux, C. Riche, A. Lecroisey, B. Keil, C. Pascard, A. Ducruix
1. 8 A Structure Of Hypoderma Lineatum Collagenase: A Member Of The Serine Proteinase Family.
Acta Crystallogr. , Sect. D V. 52 380 1996
PubMed-ID: 15299709 | Reference-DOI: 10.1107/S090744499501184X
(for further references see the PDB file header)

Molecule 1 - HYPODERMA LINEATUM COLLAGENASE
	Chains	:	A, B
	EC Number	:	3.4.21.-
	Engineered	:	YES
	Organism Common	:	EARLY CATTLE GRUB
	Organism Scientific	:	HYPODERMA LINEATUM
	Organism Taxid	:	7389

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1HYL)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	CTA	UNKNOWN	HIS A:57 , ASP A:102 , SER A:195	NULL
2	CTB	UNKNOWN	HIS B:57 , ASP B:102 , SER B:195	NULL

Asymmetric Unit

No.	Residues
1	A:42	-	A:58
2	A:168	-	A:182
3	A:191	-	A:220
4	B:42	-	B:58
5	B:168	-	B:182
6	B:191	-	B:220

(no "Cis Peptide Bond" information available for 1HYL)

(no "SAP(SNP)/Variant" information available for 1HYL)

Asymmetric Unit (3, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TRYPSIN_DOM	PS50240	Serine proteases, trypsin domain profile.	COGS_HYPLI	31-257	2	A:16-243 B:16-243
2	TRYPSIN_HIS	PS00134	Serine proteases, trypsin family, histidine active site.	COGS_HYPLI	71-76	2	A:53-58 B:53-58
3	TRYPSIN_SER	PS00135	Serine proteases, trypsin family, serine active site.	COGS_HYPLI	204-215	2	A:189-200 B:189-200

Biological Unit 1 (3, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TRYPSIN_DOM	PS50240	Serine proteases, trypsin domain profile.	COGS_HYPLI	31-257	4	A:16-243 B:16-243
2	TRYPSIN_HIS	PS00134	Serine proteases, trypsin family, histidine active site.	COGS_HYPLI	71-76	4	A:53-58 B:53-58
3	TRYPSIN_SER	PS00135	Serine proteases, trypsin family, serine active site.	COGS_HYPLI	204-215	4	A:189-200 B:189-200

(no "Exon" information available for 1HYL)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:230
 aligned with COGS_HYPLI | P08897 from UniProtKB/Swiss-Prot  Length:260

    Alignment length:230
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260
          COGS_HYPLI     31 IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHDAVSVVVYLGSAVQYEGEAVVNSERIISHSMFNPDTYLNDVALIKIPHVEYTDNIQPIRLPSGEELNNKFENIWATVSGWGQSNTDTVILQYTYNLVIDNDRCAQEYPPGIIVESTICGDTCDGKSPCFGDSGGPFVLSDKNLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQNTGIIF  260
               SCOP domains d1hyla_ A: HL collagenase                                                                                                                                                                                                              SCOP domains
               CATH domains 1hylA02       1hylA01 A:30-121,A:235-246 Trypsin-like serine proteases                                    1hylA02 A:16-29,A:122-234 Trypsin-like serine proteases                                                         1hylA01      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeeeeee....eeeeeeeeee..eeee.hhhh..eeeeeeee.........eeeeeeeeee.............eeeee................hhhhh......eeeeee...........eeeeeee..hhhhhhh.........eeeee..............eeeehhh.eeeeeeee...........eeeeehhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) TRYPSIN_DOM  PDB: A:16-243 UniProt: 31-257                                                                                                                                                                                         --- PROSITE (1)
                PROSITE (2) ----------------------------------------TRYPSI-------------------------------------------------------------------------------------------------------------------------------TRYPSIN_SER --------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1hyl A   16 IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHDAVSVVVYLGSAVQYEGEAVVNSERIISHSMFNPDTYLNDVALIKIPHVEYTDNIQPIRLPSGEELNNKFENIWATVSGWGQSNTDTVILQYTYNLVIDNDRCAQEYPPGIIVESTICGDTSDGKSPCFGDSGGPFVLSDKNLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQNTGIKF  246
                                    25        35  |||   42        52       |61        71    ||  84        94       104    || 115       125||     133       143   ||  157       167   |   176       186|      195       207       217|      226       236       246
                                                37A||                    59A               76|                          109|           125A|                   147|               170A             186A              203|        217A                             
                                                 37B|                                       80                           111            125B                    152                                                   206                                         
                                                  37C

Chain B from PDB  Type:PROTEIN  Length:230
 aligned with COGS_HYPLI | P08897 from UniProtKB/Swiss-Prot  Length:260

    Alignment length:230
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260
          COGS_HYPLI     31 IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHDAVSVVVYLGSAVQYEGEAVVNSERIISHSMFNPDTYLNDVALIKIPHVEYTDNIQPIRLPSGEELNNKFENIWATVSGWGQSNTDTVILQYTYNLVIDNDRCAQEYPPGIIVESTICGDTCDGKSPCFGDSGGPFVLSDKNLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQNTGIIF  260
               SCOP domains d1hylb_ B: HL collagenase                                                                                                                                                                                                              SCOP domains
               CATH domains 1hylB02       1hylB01 B:30-121,B:235-246 Trypsin-like serine proteases                                    1hylB02 B:16-29,B:122-234 Trypsin-like serine proteases                                                         1hylB01      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeeeeee....eeeeeeeeee..eeee.hhhh..eeeeeeee.........eeeeeeeeee.............eeeee................hhhhh......eeeeee...........eeeeeee..hhhhhhh.........eeeee..............eeeehhh.eeeeeeee...........eeeeehhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) TRYPSIN_DOM  PDB: B:16-243 UniProt: 31-257                                                                                                                                                                                         --- PROSITE (1)
                PROSITE (2) ----------------------------------------TRYPSI-------------------------------------------------------------------------------------------------------------------------------TRYPSIN_SER --------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1hyl B   16 IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHDAVSVVVYLGSAVQYEGEAVVNSERIISHSMFNPDTYLNDVALIKIPHVEYTDNIQPIRLPSGEELNNKFENIWATVSGWGQSNTDTVILQYTYNLVIDNDRCAQEYPPGIIVESTICGDTSDGKSPCFGDSGGPFVLSDKNLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQNTGIKF  246
                                    25        35  |||   42        52       |61        71    ||  84        94       104    || 115       125||     133       143   ||  157       167   |   176       186|      195       207       217|      226       236       246
                                                37A||                    59A               76|                          109|           125A|                   147|               170A             186A              203|        217A                             
                                                 37B|                                       80                           111            125B                    152                                                   206                                         
                                                  37C

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Trypsin-like serine proteases (1752)

Superfamily: Trypsin-like serine proteases (1752)

Family: Eukaryotic proteases (1343)

Protein domain: HL collagenase (2)

Common cattle grub (Hypoderma lineatum) [TaxId: 7389] (2)

1a	d1hyla_	A:
1b	d1hylb_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Beta Barrel (4804)

Topology: Thrombin, subunit H (1535)

Homologous Superfamily: Trypsin-like serine proteases (1488)

Early cattle grub (Hypoderma lineatum) (2)

1a	1hylA01	A:30-121,A:235-246
1b	1hylB01	B:30-121,B:235-246
1c	1hylA02	A:16-29,A:122-234
1d	1hylB02	B:16-29,B:122-234

(no "Pfam Domain" information available for 1HYL)

Asymmetric Unit(hide GO term definitions)

Chain A,B (COGS_HYPLI | P08897)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0004252	serine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
	GO:0008236	serine-type peptidase activity	Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
	GO:0030574	collagen catabolic process	The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Asymmetric Unit
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Biological Unit
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Description

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Ligands, Modified Residues, Ions (0, 0)

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SS Bonds (6, 6)

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