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(-) Description

Title :  COMPLEX OF HI0065 WITH ADP AND MAGNESIUM
 
Authors :  A. Teplyakov, G. L. Gilliland, Structure 2 Function Project (S2F)
Date :  01 Jan 01  (Deposition) - 07 Aug 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Nucleotide-Binding Fold, Structural Genomics, Structure 2 Function Project, S2F, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Teplyakov, G. Obmolova, M. Tordova, N. Thanki, N. Bonander, E. Eisenstein, A. J. Howard, G. L. Gilliland
Crystal Structure Of The Yjee Protein From Haemophilus Influenzae: A Putative Atpase Involved In Cell Wall Synthesis
Proteins V. 48 220 2002
PubMed-ID: 12112691  |  Reference-DOI: 10.1002/PROT.10114
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HI0065
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: HI0065
    Organism Scientific: HAEMOPHILUS INFLUENZAE
    Organism Taxid: 727

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 11)

Asymmetric Unit (4, 11)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2ADP3Ligand/IonADENOSINE-5'-DIPHOSPHATE
3MG4Ligand/IonMAGNESIUM ION
4NA3Ligand/IonSODIUM ION
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
3MG-1Ligand/IonMAGNESIUM ION
4NA-1Ligand/IonSODIUM ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
3MG-1Ligand/IonMAGNESIUM ION
4NA-1Ligand/IonSODIUM ION
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
3MG-1Ligand/IonMAGNESIUM ION
4NA-1Ligand/IonSODIUM ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:47 , GLU A:113 , ADP A:560 , HOH A:578 , HOH A:582 , HOH A:594BINDING SITE FOR RESIDUE MG A 561
02AC2SOFTWAREGLY A:40 , HOH A:580 , HOH A:610 , HOH A:619 , HOH A:662BINDING SITE FOR RESIDUE MG A 562
03AC3SOFTWARELEU A:38 , ASN A:39 , ILE A:112 , TRP A:114 , SER A:115BINDING SITE FOR RESIDUE NA A 563
04AC4SOFTWARETYR A:133 , ASP A:135BINDING SITE FOR RESIDUE ACT A 570
05AC5SOFTWARETHR B:47 , GLU B:113 , ADP B:660 , HOH B:665 , HOH B:666 , HOH B:669BINDING SITE FOR RESIDUE MG B 661
06AC6SOFTWARELEU B:38 , ASN B:39 , ILE B:112 , TRP B:114 , SER B:115BINDING SITE FOR RESIDUE NA B 663
07AC7SOFTWARETHR C:47 , GLU C:113 , ADP C:760 , HOH C:771 , HOH C:773 , HOH C:774BINDING SITE FOR RESIDUE MG C 761
08AC8SOFTWARELEU C:38 , ASN C:39 , ILE C:112 , GLU C:113 , TRP C:114 , SER C:115BINDING SITE FOR RESIDUE NA C 763
09AC9SOFTWAREASP A:10 , GLU A:11 , MET A:14 , ASP A:41 , GLY A:43 , ALA A:44 , GLY A:45 , LYS A:46 , THR A:47 , THR A:48 , GLU A:113 , ASP A:136 , ARG A:138 , MG A:561 , HOH A:578 , HOH A:582 , HOH A:593 , HOH A:624 , HOH A:681 , HOH A:709BINDING SITE FOR RESIDUE ADP A 560
10BC1SOFTWAREASP B:10 , GLU B:11 , MET B:14 , ASP B:41 , LEU B:42 , GLY B:43 , ALA B:44 , GLY B:45 , LYS B:46 , THR B:47 , THR B:48 , GLU B:113 , ASP B:136 , ARG B:138 , MG B:661 , HOH B:665 , HOH B:666 , HOH B:682 , HOH B:731BINDING SITE FOR RESIDUE ADP B 660
11BC2SOFTWAREASP C:10 , GLU C:11 , LEU C:42 , GLY C:43 , ALA C:44 , GLY C:45 , LYS C:46 , THR C:47 , THR C:48 , GLU C:113 , ASP C:136 , ARG C:138 , MG C:761 , HOH C:771 , HOH C:773 , HOH C:795 , HOH C:824 , HOH C:825 , HOH C:846 , HOH C:847 , HOH C:897BINDING SITE FOR RESIDUE ADP C 760

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1HTW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1HTW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1HTW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1HTW)

(-) Exons   (0, 0)

(no "Exon" information available for 1HTW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:158
 aligned with TSAE_HAEIN | P44492 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        
           TSAE_HAEIN     1 MESLTQYIPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLYRLADPEELEFMGIRDYFNTDSICLIEWSEKGQGILPEADILVNIDYYDDARNIELIAQTNLGKNIISAFSN 158
               SCOP domains d1htwa_ A: Hypothetical protein HI0065                                                                                                                         SCOP domains
               CATH domains 1htwA00 A:1-158 P-loop containing nucleotide triphosphate hydrolases                                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.hhhhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhhhh.............eeeeee..eeeeeee.......hhhhhhhhhhhhh...eeeee.hhhhh.......eeeeeeee..eeeeeeee.hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1htw A   1 MESLTQYIPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLYRLADPEELEFMGIRDYFNTDSICLIEWSEKGQGILPEADILVNIDYYDDARNIELIAQTNLGKNIISAFSN 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        


Chain B from PDB  Type:PROTEIN  Length:158
 aligned with TSAE_HAEIN | P44492 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        
           TSAE_HAEIN     1 MESLTQYIPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLYRLADPEELEFMGIRDYFNTDSICLIEWSEKGQGILPEADILVNIDYYDDARNIELIAQTNLGKNIISAFSN 158
               SCOP domains d1htwb_ B: Hypothetical protein HI0065                                                                                                                         SCOP domains
               CATH domains 1htwB00 B:1-158 P-loop containing nucleotide triphosphate hydrolases                                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.hhhhhhhhhhhhhhhhhh......eeeeee.....hhhhhhhhhhhhh.............eeeeee..eeeeeee......hhhhhh..hhhhhh..eeeeee.hhhhh.......eeeeeeee..eeeeeeee.hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1htw B   1 MESLTQYIPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLYRLADPEELEFMGIRDYFNTDSICLIEWSEKGQGILPEADILVNIDYYDDARNIELIAQTNLGKNIISAFSN 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        


Chain C from PDB  Type:PROTEIN  Length:158
 aligned with TSAE_HAEIN | P44492 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        
           TSAE_HAEIN     1 MESLTQYIPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLYRLADPEELEFMGIRDYFNTDSICLIEWSEKGQGILPEADILVNIDYYDDARNIELIAQTNLGKNIISAFSN 158
               SCOP domains d1htwc_ C: Hypothetical protein HI0065                                                                                                                         SCOP domains
               CATH domains 1htwC00 C:1-158 P-loop containing nucleotide triphosphate hydrolases                                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.hhhhhhhhhhhhhhhhh.......eeeeee.....hhhhhhhhhhhhh.............eeeeee..eeeeeee.....hhhhhhhhh..hhhhh.eeeeee.hhhhh.......eeeeeeee..eeeeeeee.hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1htw C   1 MESLTQYIPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLYRLADPEELEFMGIRDYFNTDSICLIEWSEKGQGILPEADILVNIDYYDDARNIELIAQTNLGKNIISAFSN 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1HTW)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (TSAE_HAEIN | P44492)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0008033    tRNA processing    The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
    GO:0002949    tRNA threonylcarbamoyladenosine modification    The attachment of a carbonyl group and a threonine to the amino group of the adenine residue immediately 3' of the anticodon, in tRNAs that decode ANN codons (where N is any base).
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  1htw
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TSAE_HAEIN | P44492: 1fl9

(-) Related Entries Specified in the PDB File

1fl9 THE YJEE PROTEIN, APO-PROTEIN HI0065 RELATED ID: HI0065 RELATED DB: TARGETDB