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(-) Description

Title :  SOLUTION STRUCTURE OF PLASMODIUM FALCIPARUM APICAL MEMBRANE ANTIGEN 1 (RESIDUES 436-545)
 
Authors :  M. Nair
Date :  07 Dec 00  (Deposition) - 09 Oct 02  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Disulphide Connectivities, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Nair, M. G. Hinds, A. M. Coley, A. N. Hodder, M. Foley, R. F. Anders, R. S. Norton
Structure Of Domain Iii Of The Blood-Stage Malaria Vaccine Candidate, Plasmodium Falciparum Apical Membrane Antigen 1 (Ama1).
J. Mol. Biol. V. 322 741 2002
PubMed-ID: 12270711  |  Reference-DOI: 10.1016/S0022-2836(02)00806-9
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - APICAL MEMBRANE ANTIGEN 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: DOMAIN III (RESIDUES 436-545)
    Gene: PF83
    Organism Common: MALARIA PARASITE P. FALCIPARUM
    Organism Scientific: PLASMODIUM FALCIPARUM
    Organism Taxid: 5833

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1HN6)

(-) Sites  (0, 0)

(no "Site" information available for 1HN6)

(-) SS Bonds  (3, 3)

NMR Structure
No.Residues
1A:443 -A:502
2A:490 -A:507
3A:492 -A:509

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1HN6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1HN6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1HN6)

(-) Exons   (0, 0)

(no "Exon" information available for 1HN6)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:110
 aligned with Q94661_PLAFA | Q94661 from UniProtKB/TrEMBL  Length:622

    Alignment length:110
                                   445       455       465       475       485       495       505       515       525       535       545
         Q94661_PLAFA   436 EVENNFPCSLYKDEIMKEIERESKRIKLNDNDDEGNKKIIAPRIFISDDKDSLKCPCDPEMVSNSTCRFFVCKCVERRAEVTSNNEVVVKEEYKDEYADIPEHKPTYDKM 545
               SCOP domains d1hn6a_ A: Apical membrane antigen 1                                                                           SCOP domains
               CATH domains 1hn6A00 A:436-545 Apical membrane antigen 1                                                                    CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhh..............................................eee......eee....................................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 1hn6 A 436 EVENNFPCSLYKDEIMKEIERESKRIKLNDNDDEGNKKIIAPRIFISDDKDSLKCPCDPEMVSNSTCRFFVCKCVERRAEVTSNNEVVVKEEYKDEYADIPEHKPTYDKM 545
                                   445       455       465       475       485       495       505       515       525       535       545
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Small proteins (3458)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Few Secondary Structures (1120)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1HN6)

(-) Gene Ontology  (3, 3)

NMR Structure(hide GO term definitions)
Chain A   (Q94661_PLAFA | Q94661)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  1hn6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

4787 4787 IS CHEMICAL SHIFT DATA