1HMJ - JenaLib

Title :   SOLUTION STRUCTURE OF RNA POLYMERASE SUBUNIT H

Authors :   A. Thiru, M. Hodach, J. Eloranta, V. Kostourou, R. Weinzierl

Date :   05 Feb 99 (Deposition) - 05 Apr 99 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A

Keywords :   Rna Polymerase, Subunit H, Rpb5, Archaea (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Thiru, M. Hodach, J. J. Eloranta, V. Kostourou, R. O. Weinzierl, S. Matthews
Rna Polymerase Subunit H Features A Beta-Ribbon Motif Within A Novel Fold That Is Present In Archaea And Eukaryotes.
J. Mol. Biol. V. 287 753 1999
PubMed-ID: 10191143 | Reference-DOI: 10.1006/JMBI.1999.2638
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:68
 aligned with RPOH_METJA | Q58443 from UniProtKB/Swiss-Prot  Length:78

    Alignment length:68
                                    19        29        39        49        59        69        
            RPOH_METJA   10 PKHEIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVVRVIRKSPTAGVSIAYRLVIKRI 77
               SCOP domains d1hmja_ A: RNA polymerase subunit RBP5 (RNA polymerase subunit H)    SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhh..hhhh........hhhhh.............................. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  1hmj A 10 PKHEIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVVRVIRKSPTAGVSIAYRLVIKRI 77
                                    19        29        39        49        59        69

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (6, 6)

NMR Structure(hide GO term definitions)

Chain A (RPOH_METJA | Q58443)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
	GO:0016779	nucleotidyltransferase activity	Catalysis of the transfer of a nucleotidyl group to a reactant.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0000428	DNA-directed RNA polymerase complex	A protein complex that possesses DNA-directed RNA polymerase activity.

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