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(-) Description

Title :  PRD OF LICT ANTITERMINATOR FROM BACILLUS SUBTILIS
 
Authors :  H. Van Tilbeurgh, N. Declerck
Date :  06 Mar 01  (Deposition) - 28 Aug 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Transcriptional Antiterminator, Pts Regulatory Domain (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Van Tilbeurgh, D. Lecoq, N. Declerck
Crystal Structure Of An Activated Form Of The Pts Regulation Domain From The Lict Transcriptional Antitrminator
Embo J. V. 20 3789 2001
PubMed-ID: 11447120  |  Reference-DOI: 10.1093/EMBOJ/20.14.3789

(-) Compounds

Molecule 1 - TRANSCRIPTION ANTITERMINATOR LICT
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: PTS-REGULATORY DOMAIN RESIDUES 57-277
    Gene: LICT
    Mutation: YES
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423
    Synonym: LICT-ANTITERMINATOR

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1H99)

(-) Sites  (0, 0)

(no "Site" information available for 1H99)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1H99)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1H99)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1H99)

(-) PROSITE Motifs  (2, 3)

Asymmetric Unit (2, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PRD_2PS51372 PRD domain profile.LICT_BACSU65-170
171-277		  2A:65-170
A:171-275
2PRD_1PS00654 PRD domain signature.LICT_BACSU98-110  1A:98-110
Biological Unit 1 (2, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PRD_2PS51372 PRD domain profile.LICT_BACSU65-170
171-277		  4A:65-170
A:171-275
2PRD_1PS00654 PRD domain signature.LICT_BACSU98-110  2A:98-110

(-) Exons   (0, 0)

(no "Exon" information available for 1H99)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:220
 aligned with LICT_BACSU | P39805 from UniProtKB/Swiss-Prot  Length:277

    Alignment length:222
                                    63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273  
           LICT_BACSU    54 DVSEKFKTLLYDIPIECMEVSEEIISYAKLQLGKKLNDSIYVSLTDHINFAIQRNQKGLDIKNALLWETKRLYKDEFAIGKEALVMVKNKTGVSLPEDEAGFIALHIVNAELNEEMPNIINITKVMQEILSIVKYHFKIEFNEESLHYYRFVTHLKFFAQRLFNGTHMESQDDFLLDTVKEKYHRAYECTKKIQTYIEREYEHKLTSDELLYLTIHIERVVK 275
               SCOP domains d1h99a1 A:54-168 Transcriptional antiterminator LicT                                                               d1h99a2 A:169-275 Transcriptional antiterminator LicT                                                       SCOP domains
               CATH domains ----------1h99A01 A:64-167 PTS-regulatory domain, PRD                                                             1h99A02 A:168-275 PTS-regulatory domain, PRD                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhh......hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh...--..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) -----------PRD_2  PDB: A:65-170 UniProt: 65-170                                                                      PRD_2  PDB: A:171-275 UniProt: 171-277                                                                    PROSITE (1)
                PROSITE (2) --------------------------------------------PRD_1        --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1h99 A  54 GAMEKFKTLLYDIPIECMEVSEEIISYAKLQLGKKLNDSIYVSLTDHINFAIQRNQKGLDIKNALLWETKRLYKDEFAIGKEALVMVKNKTGVSLPEDEAGFIALHIVNAELNEEMPNIINITKVMEEILSIVKYHFKIEFNEESLHYYRFVTDLKFFAQRLFNGTHM--EDDFLLDTVKEKYHRAYECTKKIQTYIEREYEHKLTSDELLYLTIDIERVVK 275
                                    63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       | -|      233       243       253       263       273  
                                                                                                                                                                                                 221  |                                                   
                                                                                                                                                                                                    224
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1H99)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A   (LICT_BACSU | P39805)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
biological process
    GO:0045893    positive regulation of transcription, DNA-templated    Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

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  1h99
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LICT_BACSU | P39805: 1l1c 1tlv

(-) Related Entries Specified in the PDB File

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