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(-) Description

Title :  T CELL RECEPTOR VALPHA11 (AV11S5) DOMAIN
 
Authors :  M. Machius, P. Cianga, J. Deisenhofer, E. S. Ward
Date :  21 May 01  (Deposition) - 21 Jun 01  (Release) - 21 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  T Cell Receptor, Immune Response, Immunoglobulin Fold (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Machius, P. Cianga, J. Deisenhofer, E. S. Ward
Crystal Structure Of A T Cell Receptor Valpha11 ( Av11S5) Domain: New Canonical Forms For The First And Second Complementarity Determining Regions
J. Mol. Biol. V. 310 689 2001
PubMed-ID: 11453680  |  Reference-DOI: 10.1006/JMBI.2001.4794
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MURINE T CELL RECEPTOR (TCR) VALPHA DOMAIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: QCII85.33 VALPHAPELBHIS
    Expression System Strain: BMH71-18
    Expression System Taxid: 562
    Expression System Vector: PUC19
    Fragment: V-ALPHA DOMAIN VA85.33 (AV11S5-AJ17)
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Other Details: C-TERMINAL HEXA-HISTIDINE TAG
 
Molecule 2 - MURINE T CELL RECEPTOR (TCR) VALPHA DOMAIN
    Chains: B, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: QCII85.33 VALPHAPELBHIS
    Expression System Strain: BMH71-18
    Expression System Taxid: 562
    Expression System Vector: PUC19
    Fragment: V-ALPHA DOMAIN VA85.33 (AV11S5-AJ17)
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Other Details: C-TERMINAL HEXA-HISTIDINE TAG
 
Molecule 3 - MURINE T CELL RECEPTOR (TCR) VALPHA DOMAIN
    Chains: C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: QCII85.33 VALPHAPELBHIS
    Expression System Strain: BMH71-18
    Expression System Taxid: 562
    Expression System Vector: PUC19
    Fragment: V-ALPHA DOMAIN VA85.33 (AV11S5-AJ17)
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Other Details: C-TERMINAL HEXA-HISTIDINE TAG

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2GOL1Ligand/IonGLYCEROL
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL-1Ligand/IonGLYCEROL
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL1Ligand/IonGLYCEROL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:38 , ARG A:40 , SER A:42 , HOH D:2054BINDING SITE FOR RESIDUE CL A1114
2AC2SOFTWAREASN B:38 , ARG B:40 , SER B:42 , ARG D:30BINDING SITE FOR RESIDUE CL B1112
3AC3SOFTWARESER B:39 , ALA D:50BINDING SITE FOR RESIDUE CL D1112
4AC4SOFTWARELYS C:60 , HIS C:74 , HOH C:2058 , LYS D:66BINDING SITE FOR RESIDUE GOL C1114

(-) SS Bonds  (7, 7)

Asymmetric Unit
No.Residues
1A:23 -A:88
2A:23 -A:88
3B:23 -B:88
4C:23 -C:88
5C:23 -C:88
6D:23 -D:88
7D:23 -D:88

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Ser A:7 -Pro A:8
2Ser B:7 -Pro B:8
3Ser C:7 -Pro C:8
4Ser D:7 -Pro D:8

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1H5B)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1H5B)

(-) Exons   (0, 0)

(no "Exon" information available for 1H5B)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:113
                                                                                                                                                 
               SCOP domains d1h5ba_ A: T-cell antigen receptor                                                                                SCOP domains
               CATH domains 1h5bA00 A:1-113 Immunoglobulins                                                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee.....eeeeeee.....eeeeeee...eeee..eeee.......eeeeee...hhhhheeeeeeee........ee...eeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 1h5b A   1 GDQVEQSPSALSLHEGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAAEASSGSWQLIFGSGTQLTVMPVT 113
                                    10        20        30        40        50        60        70        80        90       100       110   


Chain B from PDB  Type:PROTEIN  Length:112
                                                                                                                                                
               SCOP domains d1h5bb_ B: T-cell antigen receptor                                                                               SCOP domains
               CATH domains 1h5bB00 B:1-111 Immunoglobulins                                                                                - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee.....eeeeeee.....eeeeeee..eeeee..eeeee......eeeeee...hhhhheeeeeeee........ee...eeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 1h5b B   1 GDQVEQSPSALSLHEGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAAEASSGAWQLIFGSGTQLTVMPV 112
                                    10        20        30        40        50        60        70        80        90       100       110  


Chain C from PDB  Type:PROTEIN  Length:113
                                                                                                                                                 
               SCOP domains d1h5bc_ C: T-cell antigen receptor                                                                                SCOP domains
               CATH domains 1h5bC00 C:1-113 Immunoglobulins                                                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee...eeeeeeeee.....eeeeeee..eeeee..eeeee......eeeeee...hhhhheeeeeeeee......eee...eeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 1h5b C   1 GDQVEQSPSALSLHEGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAAEASSGSWQLIFGSGTQLTVMPVT 113
                                    10        20        30        40        50        60        70        80        90       100       110   


Chain D from PDB  Type:PROTEIN  Length:112
                                                                                                                                                
               SCOP domains d1h5bd_ D: T-cell antigen receptor                                                                               SCOP domains
               CATH domains 1h5bD00 D:1-111 Immunoglobulins                                                                                - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee...eeeeeeeee.....eeeeeee...eeee..eeee.......eeeeee...hhhhheeeeeeeee......eee...eeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 1h5b D   1 GDQVEQSPSALSLHEGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAAEASSGAWQLIFGSGTQLTVMPV 112
                                    10        20        30        40        50        60        70        80        90       100       110
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1H5B)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1H5B)

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