1H3P - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Title :   STRUCTURAL CHARACTERISATION OF A MONOCLONAL ANTIBODY SPECIFIC FOR THE PRES1 REGION OF THE HEPATITIS B VIRUS

Authors :   J. C. Pizarro, B. Vulliez-Le-Normand, M. M. Riottot, A. Budkowska, G. A. Bentley

Date :   12 Sep 02 (Deposition) - 19 Sep 02 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.60

Chains :   Asym./Biol. Unit : H,L

Keywords :   Immunoglobulin, Antibody Fab Fragment (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. C. Pizarro, B. Vulliez-Le-Normand, M. M. Riottot, A. Budkowska, G. A. Bentley
Structural And Functional Characterisation Of A Monoclonal Antibody Specific For The Pres1 Region Of Hepatitis B Virus
Febs Lett. V. 509 463 2001
PubMed-ID: 11749974 | Reference-DOI: 10.1016/S0014-5793(01)03190-8

Molecule 1 - ANTIBODY FAB FRAGMENT
	Cell	:	B-LYMPHOCYTE
	Cell Line	:	5A19 HYBRIDOME
	Chains	:	H
	Fragment	:	HEAVY CHAIN
	Organism Common	:	MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Strain	:	BALB/C

Molecule 2 - ANTIBODY FAB FRAGMENT
	Cell	:	B-LYMPHOCYTE
	Cell Line	:	5A19 HYBRIDOME
	Chains	:	L
	Fragment	:	LIGHT CHAIN
	Organism Common	:	MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Strain	:	BALB/C

		1	2
Asymmetric/Biological Unit	:	H	L

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1H3P)

(no "Site" information available for 1H3P)

Asymmetric/Biological Unit

No.	Residues
1	H:22	-	H:92
2	H:140	-	H:196
3	L:23	-	L:88
4	L:134	-	L:194

Asymmetric/Biological Unit

No.	Residues
1	Phe H:146	-	Pro H:147
2	Glu H:148	-	Pro H:149
3	Arg H:189	-	Pro H:190
4	Ser L:7	-	Pro L:8
5	Tyr L:140	-	Pro L:141

(no "SAP(SNP)/Variant" information available for 1H3P)

(no "PROSITE Motif" information available for 1H3P)

(no "Exon" information available for 1H3P)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain H from PDB  Type:PROTEIN  Length:215
                                                                                                                                                                                                                                                       
               SCOP domains d1h3ph1 H:1-113 Immunoglobulin heavy chain variable domain, VH                                                      d1h3ph2 H:114-216 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                     SCOP domains
               CATH domains 1h3pH01 H:1-113 Immunoglobulins                                                                                     1h3pH02 H:114-213 Immunoglobulins                                                               --- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee...eeeeeeeeee..hhhhh.eeeeee.....eeeeeee......ee.hhhh...eeeeee....eeeeeeeeehhhhheeeeeee.hhhhhee...eeeee........eeeee......eeeeeeeeeee.....eeee.........eee...ee....eee.eeeeee.........eeeeeehhhheeeeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1h3p H   1 EVQLVESGGGLVKPGGSLKLSCAASGFTFSSYAMSWVRQSPEKRLEWVAEVSSDGSYAYYPDTLTGRFTISRDNAKNTLYLEMTSLRSEDTAMYYCASFNWDVAYWGQGTLVTVSAAKTTPPSVYPLAPGSNSMVTLGCLVKGYFPEPVTVTWNSGSLSSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDC 216
                                    10        20        30        40        50  |     59        69        79   |||  86       |97       107       117       127||     141       151       161       171       181       191       201       211     
                                                                              52A                            82A||          94|                             128|                                                                                   
                                                                                                              82B|           96                              133                                                                                   
                                                                                                               82C

Chain L from PDB  Type:PROTEIN  Length:220
 aligned with Q52L64_MOUSE | Q52L64 from UniProtKB/TrEMBL  Length:240

    Alignment length:221
                                                                                                                                                                                                                                                     240 
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240 
         Q52L64_MOUSE    21 DIVMSQSPSSLAVSVGEKVTMSCKSSQSLLYSYNQKNYLAWYQQKPGQSPKLLIYWASTRESGVPDHFSGSGSGTDFTLTISSVKAEDLALYYCQQYYNYPLTFGAGTKLDLRRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC-   -
               SCOP domains d1h3pl1 L:1-107 Immunoglobulin light chain kappa variable domain, VL-kappa                                       d1h3pl2 L:108-215 Immunoglobulin light chain kappa constant domain, CL-kappa                                 SCOP domains
               CATH domains 1h3pL01 L:1-108 Immunoglobulins                                                                                   1h3pL02 L:109-211 Immunoglobulins                                                                      ---- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee.............eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee....-.ee...eeeeee.........ee..hhhhhh...eeeeeeeeee.....eeeeee..eee...eeeee.........eeeeeeeeehhhhhhh..eeeeeee.......eeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1h3p L   1 DIVMTQSPSSLAVSVGEKVTMSCRSSQSLLNTRTRKSYLAWFQQKPGQSPKMLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYSL-YTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNECE 215
                                    10        20       27C|||     34        44        54        64        74        84        94 |     104       114       124       134       144       154       164       174       184       194       204       214 
                                                     27A|||||                                                                 94 |                                                                                                                       
                                                      27B||||                                                                   96                                                                                                                       
                                                       27C|||                                                                                                                                                                                            
                                                        27D||                                                                                                                                                                                            
                                                         27E|                                                                                                                                                                                            
                                                          27F

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Immunoglobulin-like (3897)

Homologous Superfamily: Immunoglobulins (2282)

Mouse (Mus musculus) (152)

1a	1h3pL02	L:109-211
1b	1h3pH02	H:114-213
1c	1h3pL01	L:1-108
1d	1h3pH01	H:1-113

(no "Pfam Domain" information available for 1H3P)

Asymmetric/Biological Unit(hide GO term definitions)

Chain L (Q52L64_MOUSE | Q52L64)

molecular function
	GO:0046872		metal ion binding		Interacting selectively and non-covalently with any metal ion.

Asymmetric/Biological Unit
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(no "Sites" information available for 1h3p)

	Cis Peptide Bonds
		Arg H:189 - Pro H:190	[ RasMol ]
		Glu H:148 - Pro H:149	[ RasMol ]
		Phe H:146 - Pro H:147	[ RasMol ]
		Ser L:7 - Pro L:8	[ RasMol ]
		Tyr L:140 - Pro L:141	[ RasMol ]

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(no "Related Entries Specified in the PDB File" available for 1H3P)

Description

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Ligands, Modified Residues, Ions (0, 0)

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SS Bonds (4, 4)

Cis Peptide Bonds (5, 5)

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