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(-) Description

Title :  MULTIMODULAR PNEUMOCOCCAL CELL WALL ENDOLYSIN FROM PHAGE CP-1
 
Authors :  J. A. Hermoso, B. Monterroso, A. Albert, P. Garcia, M. Menendez, M. Martinez-Ripoll, J. L. Garcia
Date :  12 Jun 02  (Deposition) - 26 Jun 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Murein Hydrolase, Lysozyme, Multimodular, Hydrolase, Glycosidase, Bacteriolytic Enzyme, Pneumococcal Cell Wall Degradation (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. A. Hermoso, B. Monterroso, A. Albert, B. Galan, O. Ahrazem, P. Garcia, M. Martinez-Ripoll, J. L. Garcia, M. Menendez
Structural Basis For Selective Recognition Of Pneumococcal Cell Wall By Modular Endolysin From Phage Cp-1
Structure V. 11 1239 2003
PubMed-ID: 14527392  |  Reference-DOI: 10.1016/J.STR.2003.09.005

(-) Compounds

Molecule 1 - LYSOZYME
    ChainsA
    EC Number3.2.1.17
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPCIP100
    Expression System StrainDH1
    Expression System Taxid562
    Organism ScientificBACTERIOPHAGE CP-1
    Organism Taxid10747
    SynonymMUREIN HYDROLASE, ENDOLYSIN, MURAMIDASE, CP-1 LYSIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1H09)

(-) Sites  (0, 0)

(no "Site" information available for 1H09)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1H09)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asn A:179 -Pro A:180

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1H09)

(-) PROSITE Motifs  (2, 6)

Asymmetric/Biological Unit (2, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GLYCOSYL_HYDROL_F25PS00953 Glycosyl hydrolases family 25 active sites signature.LYS_BPCP110-43  1A:10-43
2CWPS51170 Cell wall-binding repeat profile.LYS_BPCP1220-239
241-260
261-280
281-300
303-322
  5A:220-239
A:241-260
A:261-280
A:281-300
A:303-322

(-) Exons   (0, 0)

(no "Exon" information available for 1H09)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:338
 aligned with LYS_BPCP1 | P15057 from UniProtKB/Swiss-Prot  Length:339

    Alignment length:338
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331        
            LYS_BPCP1     2 VKKNDLFVDVSSHNGYDITGILEQMGTTNTIIKISESTTYLNPCLSAQVEQSNPIGFYHFARFGGDVAEAEREAQFFLDNVPMQVKYLVLDYEDDPSGDAQANTNACLRFMQMIADAGYKPIYYSYKPFTHDNVDYQQILAQFPNSLWIAGYGLNDGTANFEYFPSMDGIRWWQYSSNPFDKNIVLLDDEEDDKPKTAGTWKQDSKGWWFRRNNGSFPYNKWEKIGGVWYYFDSKGYCLTSEWLKDNEKWYYLKDNGAMATGWVLVGSEWYYMDDSGAMVTGWVKYKNNWYYMTNERGNMVSNEFIKSGKGWYFMNTNGELADNPSFTKEPDGLITVA 339
               SCOP domains d1h09a2 A:2-190 N-terminal domain of endolysin                                                                                                                                               d1h09a1 A:191-339 C-terminal domain of endolysin                                                                                                      SCOP domains
               CATH domains 1h09A01 A:2-188 Glycosidases                                                                                                                                                               -----------1h09A02 A:200-281 Cholin Binding                                                  1h09A03 A:282-339                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeehhhhh..hhhhhhhhh..eeeeeeee.......hhhhhhhh.eeeeeeee.....hhhhhhhhhhhhhhh......eeeee.......hhhhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhhh...eeee.........hhhhh.....eeeeeee.....eeee.............eeeeee..eeeeee........eeeee..eeeee.........eeee....eeee........eeeee..eeeee........eeeee..eeeeeehhhhh.eeeeeeee..eeeeee...ee............eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------GLYCOSYL_HYDROL_F25  PDB: A:10-43 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CW  PDB: A:220-239  -CW  PDB: A:241-260  CW  PDB: A:261-280  CW  PDB: A:281-300  --CW  PDB: A:303-322  ----------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1h09 A   2 VKKNDLFVDVSSHNGYDITGILEQMGTTNTIIKISESTTYLNPCLSAQVEQSNPIGFYHFARFGGDVAEAEREAQFFLDNVPMQVKYLVLDYEDDPSGDAQANTNACLRFMQMIADAGYKPIYYSYKPFTHDNVDYQQILAQFPNSLWIAGYGLNDGTANFEYFPSMDGIRWWQYSSNPFDKNIVLLDDEEDDKPKTAGTWKQDSKGWWFRRNNGSFPYNKWEKIGGVWYYFDSKGYCLTSEWLKDNEKWYYLKDNGAMATGWVLVGSEWYYMDDSGAMVTGWVKYKNNWYYMTNERGNMVSNEFIKSGKGWYFMNTNGELADNPSFTKEPDGLITVA 339
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331        

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit

(-) CATH Domains  (3, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1H09)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (LYS_BPCP1 | P15057)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
    GO:0003796    lysozyme activity    Catalysis of the hydrolysis of the beta-(1->4) linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0016998    cell wall macromolecule catabolic process    The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.
    GO:0019835    cytolysis    The rupture of cell membranes and the loss of cytoplasm.
    GO:0044659    cytolysis by virus of host cell    The killing by a virus of a cell in its host organism by means of the rupture of cell membranes and the loss of cytoplasm.
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0009253    peptidoglycan catabolic process    The chemical reactions and pathways resulting in the breakdown of peptidoglycans, any of a class of glycoconjugates found in bacterial cell walls.

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  Cis Peptide Bonds
    Asn A:179 - Pro A:180   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LYS_BPCP1 | P150571oba 2ixu 2ixv 2j8f 2j8g

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