1GXU - JenaLib

Title :   HYDROGENASE MATURATION PROTEIN HYPF "ACYLPHOSPHATASE-LIKE" N-TERMINAL DOMAIN (HYPF-ACP) IN COMPLEX WITH A SUBSTRATE. CRYSTAL GROWN IN THE PRESENCE OF CARBAMOYLPHOSPHATE

Authors :   C. Rosano, S. Zuccotti, M. Stefani, M. Bucciantini, G. Ramponi, M. Bolognesi

Date :   11 Apr 02 (Deposition) - 12 Sep 02 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.27

Chains :   Asym. Unit : A
Biol. Unit 1: A  (6x)

Keywords :   Phosphatase, Acylphosphatases, Hydrogenase Maturations, Fibril Formation, Zinc-Finger, Complete Proteome (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Rosano, S. Zuccotti, M. Bucciantini, M. Stefani, G. Ramponi, M. Bolognesi
Crystal Structure And Anion Binding In The Prokaryotic Hydrogenase Maturation Factor Hypf Acylphosphatase-Like Domain
J. Mol. Biol. V. 321 785 2002
PubMed-ID: 12206761 | Reference-DOI: 10.1016/S0022-2836(02)00713-1

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 2)

Asymmetric Unit (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ACYLPHOSPHATASE_3	PS51160	Acylphosphatase-like domain profile.	HYPF_ECOLI	8-92	1	A:8-91
2	ACYLPHOSPHATASE_1	PS00150	Acylphosphatase signature 1.	HYPF_ECOLI	13-23	1	A:13-23

Biological Unit 1 (2, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ACYLPHOSPHATASE_3	PS51160	Acylphosphatase-like domain profile.	HYPF_ECOLI	8-92	6	A:8-91
2	ACYLPHOSPHATASE_1	PS00150	Acylphosphatase signature 1.	HYPF_ECOLI	13-23	6	A:13-23

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:88
 aligned with HYPF_ECOLI | P30131 from UniProtKB/Swiss-Prot  Length:750

    Alignment length:88
                                    13        23        33        43        53        63        73        83        
            HYPF_ECOLI    4 NTSCGVQLRIRGKVQGVGFRPFVWQLAQQLNLHGDVCNDGDGVEVRLREDPETFLVQLYQHCPPLARIDSVEREPFIWSQLPTEFTIR 91
               SCOP domains d1gxua_ A: Hydrogenase maturation protein HypF N-terminal domain (HypF-ACP)              SCOP domains
               CATH domains 1gxuA00 A:4-91  [code=3.30.70.100, no name defined]                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee....hhhhhhhhhhhhhh..eeeee....eeeee...hhhhhhhhhhh.....eeeeeeeeeeee......eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----ACYLPHOSPHATASE_3  PDB: A:8-91 UniProt: 8-92                                         PROSITE (1)
                PROSITE (2) ---------ACYLPHOSPHA-------------------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                  1gxu A  4 NTSCGVQLRIRGKVQGVGFRPFVWQLAQQLNLHGDVCNDGDGVEVRLREDPEVFLVQLYQHCPPLARIDSVEREPFIWSALPTEFTIR 91
                                    13        23        33        43        53        63        73        83

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

Asymmetric Unit(hide GO term definitions)

Chain A (HYPF_ECOLI | P30131)

molecular function
	GO:0016743	carboxyl- or carbamoyltransferase activity	Catalysis of the transfer of a carboxyl- or carbamoyl group from one compound (donor) to another (acceptor).
	GO:0003725	double-stranded RNA binding	Interacting selectively and non-covalently with double-stranded RNA.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0046944	protein carbamoylation	The addition of a carbamoyl group to a protein amino acid. A carbamoyl group is the acyl group -CO-NH2.
	GO:0051604	protein maturation	Any process leading to the attainment of the full functional capacity of a protein.

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	1gxu
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