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(-) Description

Title :  THE 1.92 A STRUCTURE OF STREPTOMYCES COELICOLOR A3(2) CYP154C1: A NEW MONOOXYGENASE THAT FUNCTIONALIZES MACROLIDE RING SYSTEMS
 
Authors :  L. M. Podust, Y. Kim, M. Arase, B. A. Neely, B. J. Beck, H. Bach, D. H. Sherm D. C. Lamb, S. L. Kelly, M. R. Waterman
Date :  15 Mar 02  (Deposition) - 29 Jan 03  (Release) - 05 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.92
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Oxidoreductase, Streptomyces, Cyp154C1, Macrolide Antibiotics, 12- And 14- Carbon Macrolactone Monooxygenase, Heme, Oxidoreductase. (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. M. Podust, Y. Kim, M. Arase, B. A. Neely, B. J. Beck, H. Bach, D. H. Sherman, D. C. Lamb, S. L. Kelly, M. R. Waterman
The 1. 92 A Structure Of Streptomyces Coelicolor A3(2) Cyp154C1: A New Monooxygenase That Functionalizes Macrolide Ring Systems
J. Biol. Chem. V. 278 12214 2003
PubMed-ID: 12519772  |  Reference-DOI: 10.1074/JBC.M212210200

(-) Compounds

Molecule 1 - CYTOCHROME P450 154C1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET17B
    Expression System Strain: HMS174(DE3)
    Expression System Taxid: 562
    Organism Scientific: STREPTOMYCES COELICOLOR
    Organism Taxid: 100226
    Strain: A3(2)
    Synonym: CYP154C1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric Unit (2, 10)
No.NameCountTypeFull Name
1HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2SO48Ligand/IonSULFATE ION
Biological Unit 1 (2, 5)
No.NameCountTypeFull Name
1HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2SO44Ligand/IonSULFATE ION
Biological Unit 2 (2, 5)
No.NameCountTypeFull Name
1HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2SO44Ligand/IonSULFATE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:261 , PRO A:262 , GLU A:263 , GLN A:264BINDING SITE FOR RESIDUE SO4 A1410
02AC2SOFTWAREPRO A:384 , ALA A:385 , HOH A:2250BINDING SITE FOR RESIDUE SO4 A1411
03AC3SOFTWAREGLY A:89 , ARG A:90 , HOH A:2251 , HOH A:2252 , HOH A:2253 , HOH A:2254 , THR B:228 , ALA B:230BINDING SITE FOR RESIDUE SO4 A1412
04AC4SOFTWAREGLU A:163 , GLU A:164 , HOH A:2120 , HOH A:2255 , HOH A:2256BINDING SITE FOR RESIDUE SO4 A1413
05AC5SOFTWAREHIS A:408 , SER B:179 , THR B:180 , GLN B:181 , LYS B:391 , PHE B:400 , HOH B:2261 , HOH B:2262BINDING SITE FOR RESIDUE SO4 B1408
06AC6SOFTWAREHIS B:261 , PRO B:262 , GLU B:263 , GLN B:264BINDING SITE FOR RESIDUE SO4 B1409
07AC7SOFTWAREARG B:169 , LYS B:176BINDING SITE FOR RESIDUE SO4 B1410
08AC8SOFTWAREPRO B:384 , ALA B:385BINDING SITE FOR RESIDUE SO4 B1411
09AC9SOFTWAREMET A:92 , HIS A:100 , ARG A:104 , LEU A:111 , MET A:239 , GLY A:243 , THR A:246 , THR A:247 , LEU A:250 , LEU A:283 , VAL A:292 , ARG A:295 , TYR A:318 , SER A:347 , PHE A:348 , GLY A:349 , HIS A:353 , CYS A:355 , PRO A:356 , GLY A:357 , SER A:361 , HOH A:2145 , HOH A:2257BINDING SITE FOR RESIDUE HEM A1414
10BC1SOFTWAREMET B:92 , LEU B:93 , HIS B:100 , ARG B:104 , LEU B:111 , MET B:239 , GLY B:243 , THR B:246 , THR B:247 , LEU B:250 , VAL B:292 , ARG B:295 , TYR B:318 , SER B:347 , PHE B:348 , GLY B:349 , HIS B:353 , CYS B:355 , PRO B:356 , SER B:361 , HOH B:2044 , HOH B:2162 , HOH B:2263BINDING SITE FOR RESIDUE HEM B1412

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1GWI)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Gly A:30 -Pro A:31
2Leu A:293 -Ile A:294
3Gly B:30 -Pro B:31
4Leu B:293 -Ile B:294

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1GWI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1GWI)

(-) Exons   (0, 0)

(no "Exon" information available for 1GWI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:403
 aligned with Q9L142_STRCO | Q9L142 from UniProtKB/TrEMBL  Length:407

    Alignment length:403
                                                                                                                                                                                                                                                                                                                                                                                                                                         407   
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407   
         Q9L142_STRCO     8 ARIPLDPFVTDLDGESARLRAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPRLVKDINVWGAWRRGEIPADWPLIGLANPGRSMLTVDGAEHRRLRTLVAQALTVRRVEHMRGRITELTDRLLDELPADGGVVDLKAAFAYPLPMYVVADLMGIEEARLPRLKVLFEKFFSTQTPPEEVVATLTELASIMTDTVAAKRAAPGDDLTSALIQASENGDHLTDAEIVSTLQLMVAAGHETTISLIVNAVVNLSTHPEQRALVLSGEAEWSAVVEETLRFSTPTSHVLIRFAAEDVPVGDRVIPAGDALIVSYGALGRDERAHGPTADRFDLTRTSGNRHISFGHGPHVCPGAALSRMEAGVALPALYARFPHLDLAVPAAELRNKPVVTQNDLFELPVRLA---   -
               SCOP domains d1gwia_ A: Cyp154c1 monooxygenase                                                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1gwiA00 A:8-410 Cytochrome p450                                                                                                                                                                                                                                                                                                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee......hhhhhhhhhhhh..eeeeee...eeeeee.hhhhhhhhhh...ee.hhhhhhhhhh........hhhhhh...hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.......eehhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.....eeeeee...eee..eee....eeeehhhhhh.hhhhhhhhhhh......................hhhhhhhhhhhhhhhhhhhh...ee..hhhhh..............eee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gwi A   8 ARIPLDPFVTDLDGESARLRAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPRLVKDINVWGAWRRGEIPADWPLIGLANPGRSMLTVDGAEHRRLRTLVAQALTVRRVEHMRGRITELTDRLLDELPADGGVVDLKAAFAYPLPMYVVADLMGIEEARLPRLKVLFEKFFSTQTPPEEVVATLTELASIMTDTVAAKRAAPGDDLTSALIQASENGDHLTDAEIVSTLQLMVAAGHETTISLIVNAVVNLSTHPEQRALVLSGEAEWSAVVEETLRFSTPTSHVLIRFAAEDVPVGDRVIPAGDALIVSYGALGRDERAHGPTADRFDLTRTSGNRHISFGHGPHVCPGAALSRMEAGVALPALYARFPHLDLAVPAAELRNKPVVTQNDLFELPVRLAHHH 410
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407   


Chain B from PDB  Type:PROTEIN  Length:401
 aligned with Q9L142_STRCO | Q9L142 from UniProtKB/TrEMBL  Length:407

    Alignment length:401
                                                                                                                                                                                                                                                                                                                                                                                                                                         407 
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407 
         Q9L142_STRCO     8 ARIPLDPFVTDLDGESARLRAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPRLVKDINVWGAWRRGEIPADWPLIGLANPGRSMLTVDGAEHRRLRTLVAQALTVRRVEHMRGRITELTDRLLDELPADGGVVDLKAAFAYPLPMYVVADLMGIEEARLPRLKVLFEKFFSTQTPPEEVVATLTELASIMTDTVAAKRAAPGDDLTSALIQASENGDHLTDAEIVSTLQLMVAAGHETTISLIVNAVVNLSTHPEQRALVLSGEAEWSAVVEETLRFSTPTSHVLIRFAAEDVPVGDRVIPAGDALIVSYGALGRDERAHGPTADRFDLTRTSGNRHISFGHGPHVCPGAALSRMEAGVALPALYARFPHLDLAVPAAELRNKPVVTQNDLFELPVRLA-   -
               SCOP domains d1gwib_ B: Cyp154c1 monooxygenase                                                                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1gwiB00 B:8-408 Cytochrome p450                                                                                                                                                                                                                                                                                                                                                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee......hhhhhhhhhhhh..eeeeee...eeeeee.hhhhhhhhhh...ee.hhhhhhhhhh........hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeehhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhee..ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.....eeeeee...eee..eee....eeeehhhhhh.hhhhhhhhhhh......................hhhhhhhhhhhhhhhhhhhh...ee..hhhhh..............eee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gwi B   8 ARIPLDPFVTDLDGESARLRAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPRLVKDINVWGAWRRGEIPADWPLIGLANPGRSMLTVDGAEHRRLRTLVAQALTVRRVEHMRGRITELTDRLLDELPADGGVVDLKAAFAYPLPMYVVADLMGIEEARLPRLKVLFEKFFSTQTPPEEVVATLTELASIMTDTVAAKRAAPGDDLTSALIQASENGDHLTDAEIVSTLQLMVAAGHETTISLIVNAVVNLSTHPEQRALVLSGEAEWSAVVEETLRFSTPTSHVLIRFAAEDVPVGDRVIPAGDALIVSYGALGRDERAHGPTADRFDLTRTSGNRHISFGHGPHVCPGAALSRMEAGVALPALYARFPHLDLAVPAAELRNKPVVTQNDLFELPVRLAH 408
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1GWI)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q9L142_STRCO | Q9L142)
molecular function
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004497    monooxygenase activity    Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016705    oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen    Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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