1GLF - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURES OF ESCHERICHIA COLI GLYCEROL KINASE AND THE MUTANT A65T IN AN INACTIVE TETRAMER: CONFORMATIONAL CHANGES AND IMPLICATIONS FOR ALLOSTERIC REGULATION

Authors :   M. D. Feese, H. R. Faber, C. E. Bystrom, D. W. Pettigrew, S. J. Remington

Date :   30 Aug 98 (Deposition) - 16 Oct 98 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.62

Chains :   Asym./Biol. Unit : O,X,Y,Z

Keywords :   Allostery, Cooperativity, Glycerol Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. D. Feese, H. R. Faber, C. E. Bystrom, D. W. Pettigrew, S. J. Remington
Glycerol Kinase From Escherichia Coli And An Ala65-->Thr Mutant: The Crystal Structures Reveal Conformational Change With Implications For Allosteric Regulation.
Structure V. 6 1407 1998
PubMed-ID: 9817843 | Reference-DOI: 10.1016/S0969-2126(98)00140-3
(for further references see the PDB file header)

Molecule 1 - PROTEIN (GLYCEROL KINASE)
	Chains	:	O, Y, Z, X
	EC Number	:	2.7.1.30
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	GLPK
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Other Details	:	GLYCEROL ADENOSINE DIPHOSPHATE ORTHOPHOSPHATE

		1	2	3	4
Asymmetric/Biological Unit	:	O	X	Y	Z

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 10)

No.	Name	Count	Type	Full Name
1	ADP	4	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	GOL	4	Ligand/Ion	GLYCEROL
3	PO4	2	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY O:233 , GLY O:234 , ARG O:236 , HOH O:624 , HOH O:652 , ASN X:228 , GLY X:233 , GLY X:234 , ARG X:236 , ASP Z:198 , ARG Z:211	BINDING SITE FOR RESIDUE PO4 O 601
02	AC2	SOFTWARE	ASP O:198 , ARG O:211 , GLY Y:233 , GLY Y:234 , ARG Y:236 , HOH Y:658 , GLY Z:233 , GLY Z:234 , ARG Z:236 , HOH Z:613	BINDING SITE FOR RESIDUE PO4 Y 602
03	AC3	SOFTWARE	THR O:13 , ARG O:17 , GLY O:266 , THR O:267 , GLY O:310 , ALA O:311 , ILE O:313 , GLN O:314 , ALA O:326 , GLY O:411 , ALA O:412 , ASN O:415 , HOH O:613 , HOH O:630 , HOH O:646	BINDING SITE FOR RESIDUE ADP O 607
04	AC4	SOFTWARE	GLY Y:12 , ARG Y:17 , GLY Y:266 , THR Y:267 , GLY Y:310 , ALA Y:311 , ALA Y:326 , GLY Y:411 , ALA Y:412 , ASN Y:415 , HOH Y:642 , HOH Y:647 , HOH Y:654	BINDING SITE FOR RESIDUE ADP Y 608
05	AC5	SOFTWARE	THR Z:13 , ARG Z:17 , GLY Z:266 , THR Z:267 , GLY Z:310 , ALA Z:311 , ALA Z:326 , TYR Z:327 , SER Z:329 , GLY Z:411 , ALA Z:412 , ASN Z:415 , HOH Z:611 , HOH Z:616 , HOH Z:621 , HOH Z:632 , HOH Z:639 , HOH Z:659	BINDING SITE FOR RESIDUE ADP Z 609
06	AC6	SOFTWARE	GLY X:12 , THR X:13 , ARG X:17 , GLY X:266 , THR X:267 , GLY X:310 , ALA X:311 , ALA X:326 , TYR X:327 , GLY X:411 , ALA X:412 , HOH X:613 , HOH X:616 , HOH X:617 , HOH X:639 , HOH X:646	BINDING SITE FOR RESIDUE ADP X 610
07	AC7	SOFTWARE	ARG O:83 , GLU O:84 , TYR O:135 , ASP O:245 , GLN O:246 , PHE O:270	BINDING SITE FOR RESIDUE GOL O 603
08	AC8	SOFTWARE	THR Y:13 , GLN Y:82 , ARG Y:83 , GLU Y:84 , TRP Y:103 , TYR Y:135 , ASP Y:245 , GLN Y:246 , HOH Y:642	BINDING SITE FOR RESIDUE GOL Y 604
09	AC9	SOFTWARE	ASN Z:81 , GLN Z:82 , ARG Z:83 , GLU Z:84 , TYR Z:135 , ASP Z:245 , GLN Z:246 , PHE Z:270	BINDING SITE FOR RESIDUE GOL Z 605
10	BC1	SOFTWARE	GLN X:82 , ARG X:83 , GLU X:84 , TRP X:103 , TYR X:135 , ASP X:245 , GLN X:246 , PHE X:270 , HOH X:639	BINDING SITE FOR RESIDUE GOL X 606
11	PO4	AUTHOR	ARG O:236 , ARG Y:236 , ARG Z:236 , ARG X:236	NULL

(no "SS Bond" information available for 1GLF)

Asymmetric/Biological Unit

No.	Residues
1	Ala O:353	-	Pro O:354
2	Ala Y:353	-	Pro Y:354
3	Ala Z:353	-	Pro Z:354
4	Ala X:353	-	Pro X:354

(no "SAP(SNP)/Variant" information available for 1GLF)

Asymmetric/Biological Unit (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FGGY_KINASES_1	PS00933	FGGY family of carbohydrate kinases signature 1.	GLPK_ECOLI	136-148	4	O:135-147 X:135-147 Y:135-147 Z:135-147
2	FGGY_KINASES_2	PS00445	FGGY family of carbohydrate kinases signature 2.	GLPK_ECOLI	363-383	4	O:362-382 X:362-382 Y:362-382 Z:362-382

(no "Exon" information available for 1GLF)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain O from PDB  Type:PROTEIN  Length:498
 aligned with GLPK_ECOLI | P0A6F3 from UniProtKB/Swiss-Prot  Length:502

    Alignment length:498
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492        
           GLPK_ECOLI     3 EKKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGKGGTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEKAVIEREFRPGIETTERNYRYAGWKKAVKRAMAWEEH 500
               SCOP domains d1glfo1 O:2-253 Glycerol kinase                                                                                                                                                                                                                             d1glfo2 O:254-499 Glycerol kinase                                                                                                                                                                                                                      SCOP domains
               CATH domains 1glfO01 O:2-253  [code=3.30.420.40, no name defined]                                                                                                                                                                                                        1glfO02 O:254-499  [code=3.30.420.40, no name defined]                                                                                                                                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeee....eeeeee.......eee..............eehhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeee.....eeee.........ee......hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh.hhhhhhhh..eeeehhhhhhhhhhh.....eeehhhhhh...ee....eehhhhhhhh........eee..eeeeeee.........eeeee.eehhhhhhhhh......eeeeee...eeeeee............eeeeee.....eeeeeeeee..hhhhhhhhhhh.......hhhhhhhhhh......eee................eeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhh.eeeee...hhhhhhhhhhhhhhh....hhhhh.....eeee.......hhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------FGGY_KINASES_----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FGGY_KINASES_2       --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1glf O   2 EKKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGKGGTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEKAVIEREFRPGIETTERNYRYAGWKKAVKRAMAWEEH 499
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491

Chain X from PDB  Type:PROTEIN  Length:498
 aligned with GLPK_ECOLI | P0A6F3 from UniProtKB/Swiss-Prot  Length:502

    Alignment length:498
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493        
           GLPK_ECOLI     4 KKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGKGGTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEKAVIEREFRPGIETTERNYRYAGWKKAVKRAMAWEEHD 501
               SCOP domains d1glfx1 X:3-253 Glycerol kinase                                                                                                                                                                                                                            d1glfx2 X:254-500 Glycerol kinase                                                                                                                                                                                                                       SCOP domains
               CATH domains 1glfX01 X:3-253  [code=3.30.420.40, no name defined]                                                                                                                                                                                                       1glfX02 X:254-494  [code=3.30.420.40, no name defined]                                                                                                                                                                                           ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee...eeeeeee.......eeeeee..ee.......eehhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeee.....eeee....ee...ee......hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh.hhhhhhhh..eeeehhhhhhhhhhh.....eeehhhhhh...........hhhhhhhhh.hhhhh.eee......eee.........eeeeeeeehhhhhhhh........eeeee...eeeeee............eeeeee.....eeeeeeeee..hhhhhhhhhh........hhhhhhhh........eeee...............eeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeehhhhhhhhhhhhhhhhhh.eeeee...hhhhhhhhhhhhhh.........hhhhh.eeee.....hhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------FGGY_KINASES_----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FGGY_KINASES_2       ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1glf X   3 KKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGKGGTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEKAVIEREFRPGIETTERNYRYAGWKKAVKRAMAWEEHD 500
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492

Chain Y from PDB  Type:PROTEIN  Length:499
 aligned with GLPK_ECOLI | P0A6F3 from UniProtKB/Swiss-Prot  Length:502

    Alignment length:499
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492         
           GLPK_ECOLI     3 EKKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGKGGTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEKAVIEREFRPGIETTERNYRYAGWKKAVKRAMAWEEHD 501
               SCOP domains d1glfy1 Y:2-253 Glycerol kinase                                                                                                                                                                                                                             d1glfy2 Y:254-500 Glycerol kinase                                                                                                                                                                                                                       SCOP domains
               CATH domains --1glfY01 Y:4-244  [code=3.30.420.40, no name defined]                                                                                                                                                                                             1glfY02 Y:245-498  [code=3.30.420.40, no name defined]                                                                                                                                                                                                        -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee...eeeeeeee....eeeeeeee...........eehhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeee.....eeee....ee...ee......hhhhhhhhhhh.hhhhhhhh........hhhhhhhhhhhhh.hhhhhhhh..eeeehhhhhhhhhhh.....eeehhhhh....ee....eehhhhhhhhh.hhhhh.eee....................eeeeeehhhhhhhh........eeeee...eeeeee............eee...........eeeeee..hhhhhhhhhhh........hhhhhhh........eeee...............eeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeehhhhhhhhhhhhhhhhhh.eeeee...hhhhhhhhhhhhhhh....hhhhh.....eeeee....hhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------FGGY_KINASES_----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FGGY_KINASES_2       ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1glf Y   2 EKKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGKGGTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEKAVIEREFRPGIETTERNYRYAGWKKAVKRAMAWEEHD 500
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491

Chain Z from PDB  Type:PROTEIN  Length:498
 aligned with GLPK_ECOLI | P0A6F3 from UniProtKB/Swiss-Prot  Length:502

    Alignment length:498
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493        
           GLPK_ECOLI     4 KKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGKGGTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEKAVIEREFRPGIETTERNYRYAGWKKAVKRAMAWEEHD 501
               SCOP domains d1glfz1 Z:3-253 Glycerol kinase                                                                                                                                                                                                                            d1glfz2 Z:254-500 Glycerol kinase                                                                                                                                                                                                                       SCOP domains
               CATH domains 1glfZ01 Z:3-244  [code=3.30.420.40, no name defined]                                                                                                                                                                                              1glfZ02 Z:245-500  [code=3.30.420.40, no name defined]                                                                                                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee...eeeeeee.....eeeeeeee...........eehhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeee....eeeee.....eeeeee......hhhhhhhhhhh.hhhhhhhhhh......hhhhhhhhhhhhh.hhhhhhhh..eeeehhhhhhhhhhh.....eeehhhhh....ee....eehhhhhhhh........eee.......ee.........eeeeeeeehhhhhhhhh......eeeeee...eeeeee............eeeeee.....eeeeeeeee..hhhhhhhhhhh........hhhhhhh........eeehhhhh...........eeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhh.eeeee...hhhhhhhhhhhhhhh.....hhhhhh...eeee........hhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------FGGY_KINASES_----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FGGY_KINASES_2       ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1glf Z   3 KKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGKGGTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEKAVIEREFRPGIETTERNYRYAGWKKAVKRAMAWEEHD 500
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Ribonuclease H-like motif (1424)

Superfamily: Actin-like ATPase domain (426)

Family: Glycerol kinase (21)

Protein domain: Glycerol kinase (21)

Escherichia coli [TaxId: 562] (13)

1a	d1glfo1	O:2-253
1b	d1glfo2	O:254-499
1c	d1glfx1	X:3-253
1d	d1glfx2	X:254-500
1e	d1glfy1	Y:2-253
1f	d1glfy2	Y:254-500
1g	d1glfz1	Z:3-253
1h	d1glfz2	Z:254-500

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Nucleotidyltransferase; domain 5 (788)

Homologous Superfamily: [code=3.30.420.40, no name defined] (217)

Escherichia coli. Organism_taxid: 562. (5)

1a	1glfO02	O:254-499
1b	1glfZ02	Z:245-500
1c	1glfX02	X:254-494
1d	1glfY02	Y:245-498
1e	1glfY01	Y:4-244
1f	1glfZ01	Z:3-244
1g	1glfX01	X:3-253
1h	1glfO01	O:2-253

(no "Pfam Domain" information available for 1GLF)

Asymmetric/Biological Unit(hide GO term definitions)

Chain O,X,Y,Z (GLPK_ECOLI | P0A6F3)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0004370	glycerol kinase activity	Catalysis of the reaction: ATP + glycerol = sn-glycerol 3-phosphate + ADP + 2 H(+).
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016773	phosphotransferase activity, alcohol group as acceptor	Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor).
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0006974	cellular response to DNA damage stimulus	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
	GO:0019563	glycerol catabolic process	The chemical reactions and pathways resulting in the breakdown of glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids.
	GO:0006071	glycerol metabolic process	The chemical reactions and pathways involving glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids.
	GO:0006072	glycerol-3-phosphate metabolic process	The chemical reactions and pathways involving glycerol-3-phosphate, a phosphoric monoester of glycerol.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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	1glf
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	2.7.1.30
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	GLPK_ECOLI \| P0A6F3	:	1bo5 1bot 1bu6 1bwf 1gla 1glb 1glc 1gld 1gle 1glj 1gll 3ezw

(no "Related Entries Specified in the PDB File" available for 1GLF)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 10)

Sites (11, 11)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

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PROSITE Motifs (2, 8)

Exons (0, 0)

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