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(-) Description

Title :  CRYSTAL STRUCTURE OF TABTOXIN RESISTANCE PROTEIN COMPLEXED WITH AN ACYL COENZYME A
 
Authors :  H. He, Y. Ding, M. Bartlam, F. Sun, Y. Le, X. Qin, H. Tang, R. Zhang, A. Joachimiak, Y. Liu, N. Zhao, Z. Rao
Date :  13 Dec 00  (Deposition) - 14 Jan 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Acyl Coenzyme A Complex, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  H. He, Y. Ding, M. Bartlam, F. Sun, Y. Le, X. Qin, H. Tang, R. Zhang, A. Joachimiak, Y. Liu, N. Zhao, Z. Rao
Crystal Structure Of Tabtoxin Resistance Protein Complexed With Acetyl Coenzyme A Reveals The Mechanism For Beta-Lactam Acetylation
J. Mol. Biol. V. 325 1019 2003
PubMed-ID: 12527305  |  Reference-DOI: 10.1016/S0022-2836(02)01284-6
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ACETYLTRANSFERASE
    ChainsA, B
    EC Number2.3.1.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPQE-30
    Expression System Taxid562
    Expression System Vector TypePLASMID
    Organism ScientificPSEUDOMONAS SYRINGAE PV. TABACI
    Organism Taxid322
    SynonymTABTOXIN RESISTANCE PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric Unit (2, 10)
No.NameCountTypeFull Name
1ACO2Ligand/IonACETYL COENZYME *A
2MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 5)
No.NameCountTypeFull Name
1ACO1Ligand/IonACETYL COENZYME *A
2MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 5)
No.NameCountTypeFull Name
1ACO1Ligand/IonACETYL COENZYME *A
2MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:93 , GLN A:94 , LYS A:95 , LEU A:96 , MSE A:97 , VAL A:98 , ARG A:103 , GLY A:104 , ARG A:105 , GLY A:106 , LEU A:107 , GLY A:108 , ARG A:109 , LEU A:129 , ASP A:130 , THR A:131 , VAL A:136 , ALA A:137 , ALA A:139 , PHE A:140 , TYR A:141 , ALA A:143 , HOH A:304 , HOH A:318 , GLU B:27BINDING SITE FOR RESIDUE ACO A 301
2AC2SOFTWAREVAL B:93 , GLN B:94 , LEU B:96 , MSE B:97 , VAL B:98 , ARG B:103 , GLY B:104 , ARG B:105 , GLY B:106 , LEU B:107 , GLY B:108 , ARG B:109 , ASP B:130 , THR B:131 , VAL B:136 , ALA B:137 , GLU B:138 , ALA B:139 , PHE B:140 , TYR B:141 , ALA B:143 , ARG B:148 , HOH B:303 , HOH B:305 , HOH B:309 , HOH B:312 , HOH B:322 , HOH B:323 , HOH B:348BINDING SITE FOR RESIDUE ACO B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1GHE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1GHE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1GHE)

(-) PROSITE Motifs  (1, 2)

Asymmetric Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GNATPS51186 Gcn5-related N-acetyltransferase (GNAT) domain profile.TTR_PSEAJ4-174
 
  2A:4-173
B:4-173
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GNATPS51186 Gcn5-related N-acetyltransferase (GNAT) domain profile.TTR_PSEAJ4-174
 
  1A:4-173
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GNATPS51186 Gcn5-related N-acetyltransferase (GNAT) domain profile.TTR_PSEAJ4-174
 
  1-
B:4-173

(-) Exons   (0, 0)

(no "Exon" information available for 1GHE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:170
 aligned with TTR_PSEAJ | P16966 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:170
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173
            TTR_PSEAJ     4 AQLRRVTAESFAHYRHGLAQLLFETVHGGASVGFMADLDMQQAYAWCDGLKADIAAGSLLLWVVAEDDNVLASAQLSLCQKPNGLNRAEVQKLMVLPSARGRGLGRQLMDEVEQVAVKHKRGLLHLDTEAGSVAEAFYSALAYTRVGELPGYCATPDGRLHPTAIYFKTL 173
               SCOP domains d1ghea_ A: Tabtoxin resistance protein                                                                                                                                     SCOP domains
               CATH domains 1gheA00 A:4-173  [code=3.40.630.30, no name defined]                                                                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....hhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhh.eeeeeeee..eeeeeeeeee........eeeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhh..eeeeeeeeeee.....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE GNAT  PDB: A:4-173 UniProt: 4-174                                                                                                                                          PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ghe A   4 AQLRRVTAESFAHYRHGLAQLLFETVHGGASVGFmADLDmQQAYAWCDGLKADIAAGSLLLWVVAEDDNVLASAQLSLCQKPNGLNRAEVQKLmVLPSARGRGLGRQLmDEVEQVAVKHKRGLLHLDTEAGSVAEAFYSALAYTRVGELPGYCATPDGRLHPTAIYFKTL 173
                                    13        23        33    |   43        53        63        73        83        93   |   103       113       123       133       143       153       163       173
                                                             38-MSE|                                                    97-MSE        112-MSE                                                         
                                                                  43-MSE                                                                                                                              

Chain B from PDB  Type:PROTEIN  Length:171
 aligned with TTR_PSEAJ | P16966 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:171
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172 
            TTR_PSEAJ     3 HAQLRRVTAESFAHYRHGLAQLLFETVHGGASVGFMADLDMQQAYAWCDGLKADIAAGSLLLWVVAEDDNVLASAQLSLCQKPNGLNRAEVQKLMVLPSARGRGLGRQLMDEVEQVAVKHKRGLLHLDTEAGSVAEAFYSALAYTRVGELPGYCATPDGRLHPTAIYFKTL 173
               SCOP domains d1gheb_ B: Tabtoxin resistance protein                                                                                                                                      SCOP domains
               CATH domains 1gheB00 B:3-173  [code=3.40.630.30, no name defined]                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhh..eeeeeeee..eeeeeeeeee........eeeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhh..eeeeeeeeeee.....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -GNAT  PDB: B:4-173 UniProt: 4-174                                                                                                                                          PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ghe B   3 HAQLRRVTAESFAHYRHGLAQLLFETVHGGASVGFmADLDmQQAYAWCDGLKADIAAGSLLLWVVAEDDNVLASAQLSLCQKPNGLNRAEVQKLmVLPSARGRGLGRQLmDEVEQVAVKHKRGLLHLDTEAGSVAEAFYSALAYTRVGELPGYCATPDGRLHPTAIYFKTL 173
                                    12        22        32     |  42|       52        62        72        82        92    |  102       112       122       132       142       152       162       172 
                                                              38-MSE|                                                    97-MSE        112-MSE                                                         
                                                                   43-MSE                                                                                                                              

   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1GHE)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (TTR_PSEAJ | P16966)
molecular function
    GO:0008080    N-acetyltransferase activity    Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016746    transferase activity, transferring acyl groups    Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).

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 Related Entries

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        TTR_PSEAJ | P169661j4j

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