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(-) Description

Title :  CRYSTAL STRUCTURE OF THE C123S MUTANT OF DIENELACTONE HYDROLASE (DLH) BOUND WITH THE PMS MOIETY OF THE PROTEASE INHIBITOR, PHENYLMETHYLSULFONYL FLUORIDE (PMSF)
 
Authors :  A. Robinson, K. J. Edwards, P. D. Carr, J. D. Barton, G. D. Ewart, D. L. Ollis
Date :  27 Sep 00  (Deposition) - 13 Dec 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Alpha/Beta Hydrolase Fold, Dienelactone Hydrolase, Pmsf, Pseudomonas Putida (Pac27) (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Robinson, K. J. Edwards, P. D. Carr, J. D. Barton, G. D. Ewart, D. L. Ollis
Structure Of The C123S Mutant Of Dienelactone Hydrolase (Dlh) Bound With The Pms Moiety Of The Protease Inhibitor Phenylmethylsulfonyl Fluoride (Pmsf).
Acta Crystallogr. , Sect. D V. 56 1376 2000
PubMed-ID: 11053834  |  Reference-DOI: 10.1107/S0907444900010647
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DIENELACTONE HYDROLASE
    Chains: A
    EC Number: 3.1.1.45
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PAC27
    Expression System Taxid: 562
    Expression System Vector: LAMBDA TEMPERATURE SENSITIVE VECTOR SYSTEM (RSC, ANU)
    Mutation: YES
    Organism Scientific: PSEUDOMONAS PUTIDA
    Organism Taxid: 303

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1SEB1Mod. Amino AcidO-BENZYLSULFONYL-SERINE

(-) Sites  (0, 0)

(no "Site" information available for 1GGV)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1GGV)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ala A:26 -Pro A:27

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1GGV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1GGV)

(-) Exons   (0, 0)

(no "Exon" information available for 1GGV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:232
 aligned with CLCD_PSEPU | P0A114 from UniProtKB/Swiss-Prot  Length:236

    Alignment length:232
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230  
           CLCD_PSEPU     1 MLTEGISIQSYDGHTFGALVGSPAKAPAPVIVIAQEIFGVNAFMRETVSWLVDQGYAAVCPDLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSNGKVGLVGYCLGGALAFLVAAKGYVDRAVGYYGVGLEKQLKKVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGANPLLQVHWYEEAGHSFARTSSSGYVASAAALANERRLDFLAPLQ 232
               SCOP domains d1ggva_ A: Dienelactone hydrolase                                                                                                                                                                                                        SCOP domains
               CATH domains 1ggvA00 A:1-232  [code=3.40.50.1820, no name defined]                                                                                                                                                                                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................eeee......eeeeeee......hhhhhhhhhhhhhh..eeeeehhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeee.hhhhhhhhhhhhh...eeeee...hhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhhh..eeeeee...............hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ggv A   1 MLTEGISIQSYDGHTFGALVGSPAKAPAPVIVIAQEIFGVNAFMRETVSWLVDQGYAAVCPDLYARQAPGTALDPQDEAQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSNGKVGLVGYsLGGALAFLVAAKGYVDRAVGYYGVGLEKQLNKVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGANPLLQVHWYEEAGHSFARTSSSGYVASAAALANERTLDFLAPLQ 232
                                    10        20        30        40        50        60        70        80        90       100       110       120  |    130       140       150       160       170       180       190       200       210       220       230  
                                                                                                                                                    123-SEB
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1GGV)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (CLCD_PSEPU | P0A114)
molecular function
    GO:0052689    carboxylic ester hydrolase activity    Catalysis of the hydrolysis of a carboxylic ester bond.
    GO:0008806    carboxymethylenebutenolidase activity    Catalysis of the reaction: 4-carboxymethylenebut-2-en-4-olide + H2O = 4 oxohex-2-enedioate.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
biological process
    GO:0019439    aromatic compound catabolic process    The chemical reactions and pathways resulting in the breakdown of aromatic compounds, any substance containing an aromatic carbon ring.

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    Ala A:26 - Pro A:27   [ RasMol ]  
 

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 Related Entries

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UniProtKB/Swiss-Prot
        CLCD_PSEPU | P0A114: 1zi6 1zi8 1zi9 1zic 1zix 1ziy 1zj4 1zj5 4p92

(-) Related Entries Specified in the PDB File

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