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(-) Description

Title :  BACTERIOPHAGE LAMBDA SER/THR PROTEIN PHOSPHATASE
 
Authors :  W. C. Voegtli, D. J. White, N. J. Reiter, F. Rusnak, A. C. Rosenzweig
Date :  31 Oct 00  (Deposition) - 07 Mar 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  B (2x),C (2x)
Biol. Unit 5:  B (1x),C (1x)
Keywords :  Bacteriophage Lambda, Ser/Thr Protein Phosphatase, Ppase, Protein Phosphatase, Manganese, Sulfate, Viral Protein, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  W. C. Voegtli, D. J. White, N. J. Reiter, F. Rusnak, A. C. Rosenzweig
Structure Of The Bacteriophage Lambda Ser/Thr Protein Phosphatase With Sulfate Ion Bound In Two Coordination Modes.
Biochemistry V. 39 15365 2000
PubMed-ID: 11112522  |  Reference-DOI: 10.1021/BI0021030
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SERINE/THREONINE PROTEIN PHOSPHATASE
    ChainsA, B, C
    EC Number3.1.3.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPT7-7
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypeT7
    Organism ScientificENTEROBACTERIA PHAGE LAMBDA
    Organism Taxid10710

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit ABC
Biological Unit 1 (1x)A  
Biological Unit 2 (1x) B 
Biological Unit 3 (1x)  C
Biological Unit 4 (2x) B (2x)C (2x)
Biological Unit 5 (1x) B (1x)C (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric Unit (3, 12)
No.NameCountTypeFull Name
1HG2Ligand/IonMERCURY (II) ION
2MN6Ligand/IonMANGANESE (II) ION
3SO44Ligand/IonSULFATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1HG-1Ligand/IonMERCURY (II) ION
2MN-1Ligand/IonMANGANESE (II) ION
3SO41Ligand/IonSULFATE ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1HG-1Ligand/IonMERCURY (II) ION
2MN-1Ligand/IonMANGANESE (II) ION
3SO42Ligand/IonSULFATE ION
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1HG-1Ligand/IonMERCURY (II) ION
2MN-1Ligand/IonMANGANESE (II) ION
3SO41Ligand/IonSULFATE ION
Biological Unit 4 (1, 4)
No.NameCountTypeFull Name
1HG-1Ligand/IonMERCURY (II) ION
2MN-1Ligand/IonMANGANESE (II) ION
3SO44Ligand/IonSULFATE ION
Biological Unit 5 (1, 2)
No.NameCountTypeFull Name
1HG-1Ligand/IonMERCURY (II) ION
2MN-1Ligand/IonMANGANESE (II) ION
3SO42Ligand/IonSULFATE ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP C:20 , HIS C:22 , ASP C:49 , MN C:1002 , SO4 C:3003 , HOH C:3082BINDING SITE FOR RESIDUE MN C 1001
02AC2SOFTWAREASP C:49 , ASN C:75 , HIS C:139 , HIS C:186 , MN C:1001 , SO4 C:3003BINDING SITE FOR RESIDUE MN C 1002
03AC3SOFTWAREASP B:20 , HIS B:22 , ASP B:49 , MN B:1004 , HOH B:3011 , HOH B:3012 , HOH B:3088BINDING SITE FOR RESIDUE MN B 1003
04AC4SOFTWAREASP B:49 , ASN B:75 , HIS B:139 , HIS B:186 , MN B:1003 , SO4 B:3002 , HOH B:3011BINDING SITE FOR RESIDUE MN B 1004
05AC5SOFTWAREASP A:49 , ASN A:75 , HIS A:139 , HIS A:186 , MN A:1006 , SO4 A:3001 , HOH A:3056BINDING SITE FOR RESIDUE MN A 1005
06AC6SOFTWAREASP A:20 , HIS A:22 , ASP A:49 , MN A:1005 , HOH A:3047 , HOH A:3055 , HOH A:3056BINDING SITE FOR RESIDUE MN A 1006
07AC7SOFTWARETHR A:203 , GLY A:204 , PHE A:207 , CYS A:208BINDING SITE FOR RESIDUE HG A 2001
08AC8SOFTWARETHR B:203 , GLY B:204 , CYS B:208BINDING SITE FOR RESIDUE HG B 2002
09AC9SOFTWAREASP A:49 , ASN A:75 , HIS A:76 , TRP A:160 , ARG A:162 , HIS A:186 , MN A:1005 , HOH A:3032 , HOH A:3047 , HOH A:3054 , HOH A:3056BINDING SITE FOR RESIDUE SO4 A 3001
10BC1SOFTWAREASP B:49 , ASN B:75 , HIS B:76 , ARG B:162 , HIS B:186 , MN B:1004 , HOH B:3011 , HOH B:3088 , HOH B:3090 , ASN C:103BINDING SITE FOR RESIDUE SO4 B 3002
11BC2SOFTWAREASP C:20 , HIS C:22 , ASP C:49 , ARG C:53 , ASN C:75 , HIS C:76 , ARG C:162 , HIS C:186 , MN C:1001 , MN C:1002 , HOH C:3019 , HOH C:3082BINDING SITE FOR RESIDUE SO4 C 3003
12BC3SOFTWAREPHE B:144 , ASP B:145 , GLU B:146 , LYS B:151BINDING SITE FOR RESIDUE SO4 B 3004

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1G5B)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1G5B)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1G5B)

(-) PROSITE Motifs  (1, 3)

Asymmetric Unit (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SER_THR_PHOSPHATASEPS00125 Serine/threonine specific protein phosphatases signature.PP_LAMBD72-77
 
 
  3A:72-77
B:72-77
C:72-77
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SER_THR_PHOSPHATASEPS00125 Serine/threonine specific protein phosphatases signature.PP_LAMBD72-77
 
 
  1A:72-77
-
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SER_THR_PHOSPHATASEPS00125 Serine/threonine specific protein phosphatases signature.PP_LAMBD72-77
 
 
  1-
B:72-77
-
Biological Unit 3 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SER_THR_PHOSPHATASEPS00125 Serine/threonine specific protein phosphatases signature.PP_LAMBD72-77
 
 
  1-
-
C:72-77
Biological Unit 4 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SER_THR_PHOSPHATASEPS00125 Serine/threonine specific protein phosphatases signature.PP_LAMBD72-77
 
 
  4-
B:72-77
C:72-77
Biological Unit 5 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SER_THR_PHOSPHATASEPS00125 Serine/threonine specific protein phosphatases signature.PP_LAMBD72-77
 
 
  2-
B:72-77
C:72-77

(-) Exons   (0, 0)

(no "Exon" information available for 1G5B)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:219
 aligned with PP_LAMBD | P03772 from UniProtKB/Swiss-Prot  Length:221

    Alignment length:219
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210         
             PP_LAMBD     1 MRYYEKIDGSKYRNIWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELITFPWFRAVRGNHEQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIELVSKDKKYVICHADYPFDEYEFGKPVDHQQVIWNRERISNSQNGIVKEIKGADTFIFGHTPAVKPLKFANQMYIDTGAVFCGNLTLIQVQGE 219
               SCOP domains d1g5ba_ A: lambda ser/thr protein phosphatase                                                                                                                                                                               SCOP domains
               CATH domains 1g5bA00 A:1-219  [code=3.60.21.10, no name defined]                                                                                                                                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.hhh..eeee.....hhhhhhhhhhhhh......eeee.........hhhhhhhhhhh..eee..hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee..eeeee................hhhhhhhhhhhhhhhhh..........eeee........eee..eee...hhhhhh...eeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------SER_TH---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g5b A   1 MRYYEKIDGSKYRNIWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELITFPWFRAVRGNHEQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIELVSKDKKYVICHADYPFDEYEFGKPVDHQQVIWNRERISNSQNGIVKEIKGADTFIFGHTPAVKPLKFANQMYIDTGAVFCGNLTLIQVQGA 219
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210         

Chain B from PDB  Type:PROTEIN  Length:221
 aligned with PP_LAMBD | P03772 from UniProtKB/Swiss-Prot  Length:221

    Alignment length:221
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220 
             PP_LAMBD     1 MRYYEKIDGSKYRNIWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELITFPWFRAVRGNHEQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIELVSKDKKYVICHADYPFDEYEFGKPVDHQQVIWNRERISNSQNGIVKEIKGADTFIFGHTPAVKPLKFANQMYIDTGAVFCGNLTLIQVQGEGA 221
               SCOP domains d1g5bb_ B: lambda ser/thr protein phosphatase                                                                                                                                                                                 SCOP domains
               CATH domains 1g5bB00 B:1-221  [code=3.60.21.10, no name defined]                                                                                                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.hhh..eeee.....hhhhhhhhhhhhh......eeee.........hhhhhhhhhhh..eee..hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee....eeeee...............hhhhhhhhhhhhhhhhh..........eeee........eee..eee...hhhhhh...eeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------SER_TH------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g5b B   1 MRYYEKIDGSKYRNIWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELITFPWFRAVRGNHEQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIELVSKDKKYVICHADYPFDEYEFGKPVDHQQVIWNRERISNSQNGIVKEIKGADTFIFGHTPAVKPLKFANQMYIDTGAVFCGNLTLIQVQGAGA 221
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220 

Chain C from PDB  Type:PROTEIN  Length:221
 aligned with PP_LAMBD | P03772 from UniProtKB/Swiss-Prot  Length:221

    Alignment length:221
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220 
             PP_LAMBD     1 MRYYEKIDGSKYRNIWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELITFPWFRAVRGNHEQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIELVSKDKKYVICHADYPFDEYEFGKPVDHQQVIWNRERISNSQNGIVKEIKGADTFIFGHTPAVKPLKFANQMYIDTGAVFCGNLTLIQVQGEGA 221
               SCOP domains d1g5bc_ C: lambda ser/thr protein phosphatase                                                                                                                                                                                 SCOP domains
               CATH domains 1g5bC00 C:1-221  [code=3.60.21.10, no name defined]                                                                                                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.hhh..eeee.....hhhhhhhhhhhh.......eeee.........hhhhhhhhhhh..eee..hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee....eeeee...............hhhhhhhhhhhhhhhhh..........eeee........eee..eee...hhhhhh...eeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------SER_TH------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g5b C   1 MRYYEKIDGSKYRNIWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELITFPWFRAVRGNHEQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIELVSKDKKYVICHADYPFDEYEFGKPVDHQQVIWNRERISNSQNGIVKEIKGADTFIFGHTPAVKPLKFANQMYIDTGAVFCGNLTLIQVQGAGA 221
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220 

   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit

(-) CATH Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1G5B)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (PP_LAMBD | P03772)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004721    phosphoprotein phosphatase activity    Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0006470    protein dephosphorylation    The process of removing one or more phosphoric residues from a protein.

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