1G3V | BD0042 - JenaLib

Title :   CRYSTAL STRUCTURE OF NICKEL-D[CGTGTACACG]2

Authors :   J. A. Subirana, N. G. A. Abrescia

Date :   25 Oct 00 (Deposition) - 11 Jan 02 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.10

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Nickel Binding, B-Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. A. Abrescia, T. Huynh-Dinh, J. A. Subirana
Nickel-Guanine Interactions In Dna: Crystal Structure Of Nickel-D[Cgtgtacacg]2.
J. Biol. Inorg. Chem. V. 7 195 2002
PubMed-ID: 11862555 | Reference-DOI: 10.1007/S007750100286
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 8)

Sites (8, 8)

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	DG A:10 , HOH A:101 , HOH A:102 , HOH A:103 , HOH A:104 , DG C:30	BINDING SITE FOR RESIDUE NI A 100
2	AC2	SOFTWARE	DG B:20 , HOH B:201 , HOH B:202 , HOH B:203 , HOH B:204 , HOH B:205	BINDING SITE FOR RESIDUE NI B 200
3	AC3	SOFTWARE	DG A:2 , HOH A:301 , HOH A:302 , HOH A:303 , HOH A:304 , HOH A:305	BINDING SITE FOR RESIDUE NI A 300
4	AC4	SOFTWARE	DG D:40 , HOH D:401 , HOH D:402 , HOH D:403 , HOH D:404 , HOH D:405	BINDING SITE FOR RESIDUE NI D 400
5	AC5	SOFTWARE	DG D:32 , HOH D:501 , HOH D:502 , HOH D:503 , HOH D:504 , HOH D:505	BINDING SITE FOR RESIDUE NI D 500
6	AC6	SOFTWARE	DG B:12 , HOH B:601 , HOH B:602 , HOH B:603 , HOH B:604 , HOH B:605	BINDING SITE FOR RESIDUE NI B 600
7	AC7	SOFTWARE	HOH A:701 , HOH A:702 , HOH A:703 , HOH A:704 , HOH A:705 , HOH A:706	BINDING SITE FOR RESIDUE NI A 700
8	AC8	SOFTWARE	DG C:22 , HOH C:801 , HOH C:802 , HOH C:803 , HOH C:804 , HOH C:805	BINDING SITE FOR RESIDUE NI C 800

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

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Chain A from PDB  Type:DNA  Length:10
                                         
                  1g3v A  1 CGTGTACACG 10
                                    10

Chain B from PDB  Type:DNA  Length:10
                                         
                  1g3v B 11 CGTGTACACG 20
                                    20

Chain C from PDB  Type:DNA  Length:10
                                         
                  1g3v C 21 CGTGTACACG 30
                                    30

Chain D from PDB  Type:DNA  Length:10
                                         
                  1g3v D 31 CGTGTACACG 40
                                    40

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Classification and Annotation

SCOP Domains (0, 0)

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Gene Ontology (0, 0)

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