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(-) Description

Title :  CRYSTAL STRUCTURE ANALYSIS OF PYROCOCCUS FURIOSUS CELL DIVISION ATPASE MIND
 
Authors :  I. Hayashi, T. Oyama, K. Morikawa
Date :  25 Oct 00  (Deposition) - 21 Apr 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Alpha-Beta-Alpha Layered, Protein-Adp Complex, Cell Cycle, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Hayashi, T. Oyama, K. Morikawa
Structural And Functional Studies Of Mind Atpase: Implications For The Molecular Recognition Of The Bacterial Cell Division Apparatus.
Embo J. V. 20 1819 2001
PubMed-ID: 11296216  |  Reference-DOI: 10.1093/EMBOJ/20.8.1819
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CELL DIVISION INHIBITOR
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: MIND
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 2261
    Other Details: ADP-BOUND FORM
    Synonym: MIND ATPASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG1Ligand/IonMAGNESIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:17 , ADP A:238 , HOH A:272 , HOH A:274 , HOH A:277 , HOH A:285BINDING SITE FOR RESIDUE MG A 239
2AC2SOFTWAREGLY A:13 , THR A:14 , GLY A:15 , LYS A:16 , THR A:17 , THR A:18 , ASN A:171 , ARG A:172 , PRO A:198 , GLU A:199 , ASP A:200 , ILE A:203 , ARG A:204 , THR A:207 , MG A:239 , HOH A:262 , HOH A:272 , HOH A:274 , HOH A:284 , HOH A:287 , HOH A:332BINDING SITE FOR RESIDUE ADP A 238

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1G3Q)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1G3Q)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1G3Q)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1G3Q)

(-) Exons   (0, 0)

(no "Exon" information available for 1G3Q)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:237
 aligned with Q8U3I1_PYRFU | Q8U3I1 from UniProtKB/TrEMBL  Length:245

    Alignment length:237
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       
         Q8U3I1_PYRFU     1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDNVYVLPGAVDWEHVLKADPRKLPEVIKSLKDKFDFILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDRDIPPEAAEDVMEVPLLAVIPEDPAIREGTLEGIPAVKYKPESKGAKAFVKLAEEIEKLA 237
               SCOP domains d1g3qa_ A: Cell division regulator MinD                                                                                                                                                                                                       SCOP domains
               CATH domains 1g3qA00 A:1-237 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                          CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee......hhhhhhhhhhhhhhhh...eeeee......hhhhhh.......hhhhhhh...hhhhhhee.....eeee....hhhhhhhhhhhhhhhhhhhhhhhh.eeeee.....hhhhhhhhh...eeeeee..hhhhhhhhhhhhhhhhhh..eeeeeeeeee.......hhhhhhhhhh..eeeeee.hhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g3q A   1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDNVYVLPGAVDWEHVLKADPRKLPEVIKSLKDKFDFILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDRDIPPEAAEDVMEVPLLAVIPEDPAIREGTLEGIPAVKYKPESKGAKAFVKLAEEIEKLA 237
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1G3Q)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q8U3I1_PYRFU | Q8U3I1)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.

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 Related Entries

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UniProtKB/TrEMBL
        Q8U3I1_PYRFU | Q8U3I1: 1g3r

(-) Related Entries Specified in the PDB File

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