1FLG - JenaLib

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Title :   CRYSTAL STRUCTURE OF THE QUINOPROTEIN ETHANOL DEHYDROGENASE FROM PSEUDOMONAS AERUGINOSA

Authors :   T. Keitel, A. Diehl, T. Knaute, J. J. Stezowski, W. Hohne, H. Gorisch

Date :   14 Aug 00 (Deposition) - 30 Aug 00 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.60

Chains :   Asym./Biol. Unit : A,B

Keywords :   Quinoprotein, Superbarrel, Dehydrogenase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. Keitel, A. Diehl, T. Knaute, J. J. Stezowski, W. Hohne, H. Gorisch
X-Ray Structure Of The Quinoprotein Ethanol Dehydrogenase From Pseudomonas Aeruginosa: Basis Of Substrate Specificity.
J. Mol. Biol. V. 297 961 2000
PubMed-ID: 10736230 | Reference-DOI: 10.1006/JMBI.2000.3603
(for further references see the PDB file header)

Molecule 1 - PROTEIN (QUINOPROTEIN ETHANOL DEHYDROGENASE)
	Chains	:	A, B
	Organism Scientific	:	PSEUDOMONAS AERUGINOSA
	Organism Taxid	:	287

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 6)

No.	Name	Count	Type	Full Name
1	CA	4	Ligand/Ion	CALCIUM ION
2	PQQ	2	Ligand/Ion	PYRROLOQUINOLINE QUINONE

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:179 , ASN A:266 , ASP A:316 , PQQ A:701	BINDING SITE FOR RESIDUE CA A 751
2	AC2	SOFTWARE	ASP A:11 , THR A:14 , ASP A:17	BINDING SITE FOR RESIDUE CA A 761
3	AC3	SOFTWARE	GLU B:179 , ASN B:266 , ASP B:316 , PQQ B:702	BINDING SITE FOR RESIDUE CA B 752
4	AC4	SOFTWARE	ASP B:11 , THR B:14 , ASP B:17	BINDING SITE FOR RESIDUE CA B 762
5	AC5	SOFTWARE	GLU A:61 , CYS A:105 , CYS A:106 , ARG A:111 , THR A:155 , SER A:176 , GLY A:177 , ASP A:178 , TRP A:248 , ASN A:266 , ARG A:344 , ASN A:413 , TRP A:414 , TRP A:489 , GLY A:552 , ALA A:553 , CA A:751	BINDING SITE FOR RESIDUE PQQ A 701
6	AC6	SOFTWARE	GLU B:61 , CYS B:105 , CYS B:106 , ARG B:111 , THR B:155 , SER B:176 , GLY B:177 , ASP B:178 , GLU B:179 , TRP B:248 , ASN B:266 , ARG B:344 , LEU B:409 , ASN B:413 , TRP B:414 , TRP B:489 , GLY B:552 , ALA B:553 , CA B:752	BINDING SITE FOR RESIDUE PQQ B 702

Asymmetric/Biological Unit

No.	Residues
1	A:105	-	A:106
2	B:105	-	B:106

Asymmetric/Biological Unit

No.	Residues
1	Ser A:405	-	Pro A:406
2	Ser B:405	-	Pro B:406

(no "SAP(SNP)/Variant" information available for 1FLG)

Asymmetric/Biological Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BACTERIAL_PQQ_1	PS00363	Bacterial quinoprotein dehydrogenases signature 1.	EXAA_PSEAE	51-79	2	A:17-45 B:17-45
2	BACTERIAL_PQQ_2	PS00364	Bacterial quinoprotein dehydrogenases signature 2.	EXAA_PSEAE	282-303	2	A:248-269 B:248-269

(no "Exon" information available for 1FLG)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:582
 aligned with EXAA_PSEAE | Q9Z4J7 from UniProtKB/Swiss-Prot  Length:623

    Alignment length:582
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614  
           EXAA_PSEAE    35 KDVTWEDIANDDKTTGDVLQYGMGTHAQRWSPLKQVNADNVFKLTPAWSYSFGDEKQRGQESQAIVSDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVGYGGAVPLWGGDMADLTRPVAQGGSFWVFKLPSW 616
               SCOP domains d1flga_ A: Ethanol dehydrogenase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1flgA00 A:1-582  [code=2.140.10.10, no name defined]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhh...............ee........hhhhheeeeeee.............eee..eeeeee...eeeeee.....eeeeee..................eee..eeeeee...eeeeee.....eeeeee..hhhhh.......eeee......eeeee...hhhhh...eeeee......eeeeee.....eeee..eeeee...................hhhhhhh........eee....eeeeee......hhhhhh...............eeeee......eeeeee...............eeeeee.....eeeeeeee....eeeeee.....eeeeee.......eeee......eee..................eee.............ee......eeeeee.eeeeeee.............eeeeeee......eeeeee......eeeeeee........eee...eeeee....eeeeee.....eeeeee.........eeeee..eeeeeeee...hhhhhhhhhhhhhhh......eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------BACTERIAL_PQQ_1  PDB: A:17-45----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------BACTERIAL_PQQ_2       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1flg A   1 KDVTWEDIANDDKTTGDVLQYGMGTHAQRWSPLKQVNADNVFKLTPAWSYSFGDEKQRGQESQAIVSDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVGYGGAVPLWGGDMADLTRPVAQGGSFWVFKLPSW 582
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580

Chain B from PDB  Type:PROTEIN  Length:582
 aligned with EXAA_PSEAE | Q9Z4J7 from UniProtKB/Swiss-Prot  Length:623

    Alignment length:582
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614  
           EXAA_PSEAE    35 KDVTWEDIANDDKTTGDVLQYGMGTHAQRWSPLKQVNADNVFKLTPAWSYSFGDEKQRGQESQAIVSDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVGYGGAVPLWGGDMADLTRPVAQGGSFWVFKLPSW 616
               SCOP domains d1flgb_ B: Ethanol dehydrogenase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1flgB00 B:1-582  [code=2.140.10.10, no name defined]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhh..................ee........hhhhheeeeeee.............eee..eeeeee...eeeeee.....eeeeee..................eee..eeeeee...eeeeee.....eeeeee..hhhhh.......eeee......eeeee...hhhhh...eeeee......eeeeee.......ee..ee......................hhhhhh.........eee....eeeeee......hhhhhh...............eeeee......eeeeee...............eeeeee.....eeeeeeee....eeeeee.....eeeeee.......eeeee....eeee.hhhh.............eee.............ee......eeeeee.eeeeeee.............eeeeeee......eeeeee......eeeeeee........eee...eeeee....eeeeee.....eeeeee.........eeeee..eeeeeeee....hhhhhhhhhhhhhh......eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------BACTERIAL_PQQ_1  PDB: B:17-45----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------BACTERIAL_PQQ_2       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1flg B   1 KDVTWEDIANDDKTTGDVLQYGMGTHAQRWSPLKQVNADNVFKLTPAWSYSFGDEKQRGQESQAIVSDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVGYGGAVPLWGGDMADLTRPVAQGGSFWVFKLPSW 582
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: 8-bladed beta-propeller (135)

Superfamily: Quinoprotein alcohol dehydrogenase-like (14)

Family: Quinoprotein alcohol dehydrogenase-like (13)

Protein domain: Ethanol dehydrogenase (1)

Pseudomonas aeruginosa [TaxId: 287] (1)

1a	d1flga_	A:
1b	d1flgb_	B:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: 8 Propellor (110)

Topology: Methanol Dehydrogenase; Chain A (110)

Homologous Superfamily: [code=2.140.10.10, no name defined] (14)

Pseudomonas aeruginosa. Organism_taxid: 287 (1)

1a	1flgA00	A:1-582
1b	1flgB00	B:1-582

(no "Pfam Domain" information available for 1FLG)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (EXAA_PSEAE | Q9Z4J7)

molecular function
	GO:0052936	2-chloroethanol:cytochrome c oxidoreductase activity	Catalysis of the reaction: 2-chloroethanol + 2 cytochrome c = chloroacetaldehyde + 2 reduced cytochrome c.
	GO:0018468	alcohol dehydrogenase (acceptor) activity	Catalysis of the reaction: a primary alcohol + acceptor = an aldehyde + reduced acceptor.
	GO:0052934	alcohol dehydrogenase (cytochrome c) activity	Catalysis of the reaction: primary alcohol + 2 cytochrome c = 2 reduced cytochrome c + an aldehyde + 2 H+.
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0052935	ethanol:cytochrome c oxidoreductase activity	Catalysis of the reaction: ethanol + 2 cytochrome c = 2 reduced cytochrome c + acetaldehyde.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
biological process
	GO:0006069	ethanol oxidation	An ethanol metabolic process in which ethanol is converted to acetyl-CoA via acetaldehyde and acetate.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0030288	outer membrane-bounded periplasmic space	The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Asymmetric/Biological Unit
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	Cis Peptide Bonds
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		Ser B:405 - Pro B:406	[ RasMol ]

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	1flg
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Description

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Ligands, Modified Residues, Ions (2, 6)

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SS Bonds (2, 2)

Cis Peptide Bonds (2, 2)

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