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(-)Asym./Biol. Unit
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(-) Description

Title :  X-RAY STRUCTURES OF FRAGMENTS FROM BINDING AND NONBINDING VERSIONS OF A HUMANIZED ANTI-CD18 ANTIBODY: STRUCTURAL INDICATIONS OF THE KEY ROLE OF VH RESIDUES 59 TO 65
 
Authors :  C. Eigenbrot, J. Kessler
Date :  01 Nov 93  (Deposition) - 31 Jan 94  (Release) - 18 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  H,L
Keywords :  Immunoglobulin, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Eigenbrot, T. Gonzalez, J. Mayeda, P. Carter, W. Werther, T. Hotaling, J. Fox, J. Kessler
X-Ray Structures Of Fragments From Binding And Nonbinding Versions Of A Humanized Anti-Cd18 Antibody: Structural Indications Of The Key Role Of Vh Residues 59 To 65.
Proteins V. 18 49 1994
PubMed-ID: 7908437  |  Reference-DOI: 10.1002/PROT.340180107

(-) Compounds

Molecule 1 - H52 FV (LIGHT CHAIN)
    Chains: L
    Engineered: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 2 - H52 FV (HEAVY CHAIN)
    Chains: H
    Engineered: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : HL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1FGV)

(-) Sites  (0, 0)

(no "Site" information available for 1FGV)

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1H:22 -H:96
2L:23 -L:88

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ser L:7 -Pro L:8
2Leu L:94 -Pro L:95

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1FGV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1FGV)

(-) Exons   (0, 0)

(no "Exon" information available for 1FGV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain H from PDB  Type:PROTEIN  Length:120
                                                                                                                                                        
               SCOP domains d1fgvh_ H: Immunoglobulin heavy chain variable domain, VH                                                                SCOP domains
               CATH domains 1fgvH00 H:1-124 Immunoglobulins                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee...hhh..eeeeee.....eeeeeee......eee.......eeeeee....eeeeee....hhh.eeeeeeeee.....eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 1fgv H   1 EVQLVESGGGLVQPGGSLRLSCATSGYTFTEYTMHWMRQAPGKGLEWVAGINPKNGGTSYADSVKGRFTISVDKSKNTLYLQMNSLRAEDTAVYYCARWRGLDVRYFDVWGQGTLVTVSS 124
                                    10        20        30        40        50        60        70        80        90       100 ||    114       124
                                                                                                                               102|                 
                                                                                                                                107                 


Chain L from PDB  Type:PROTEIN  Length:107
                                                                                                                                           
               SCOP domains d1fgvl_ L: Immunoglobulin light chain kappa variable domain, VL-kappa                                       SCOP domains
               CATH domains 1fgvL00 L:1-107 Immunoglobulins                                                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeee........eeeeee......eeeee...ee.......eeeeee..eeeeee....hhh..eeeeee......eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 1fgv L   1 DIQMTQSPSSLSASVGDRVTITCRASQDINNYLNWYQQKPGKAPKLLIYYTSTLESGVPSRFSGSGSGTDYTLTISSLQPEDFATYYCQQGNTLPPTFGAGTKVEIK 107
                                    10        20        30        40        50        60        70        80        90       100
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1FGV)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1FGV)

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  Sites
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  Cis Peptide Bonds
    Leu L:94 - Pro L:95   [ RasMol ]  
    Ser L:7 - Pro L:8   [ RasMol ]  
 

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  1fgv
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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