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(-) Description

Title :  CRYSTAL STRUCTURE OF BOVINE ALPHA-1,3-GALACTOSYLTRANSFERASE CATALYTIC DOMAIN.
 
Authors :  L. N. Gastinel, C. Bignon, J. H. Shaper, D. H. Joziasse
Date :  28 Jul 00  (Deposition) - 28 Jul 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  N
Keywords :  Alpha Beta Alpha Protein, Nucleotide Binding Protein, Rossmann Fold, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  L. N. Gastinel, C. Bignon, A. K. Misra, O. Hindsgaul, J. H. Shaper, D. H. Joziasse
Bovine Alpha1, 3-Galactosyltransferase Catalytic Domain Structure And Its Relationship With Abo Histo-Blood Group And Glycosphingolipid Glycosyltransferases.
Embo J. V. 20 638 2001
PubMed-ID: 11179209  |  Reference-DOI: 10.1093/EMBOJ/20.4.638
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - N-ACETYLLACTOSAMINIDE ALPHA-1,3- GALACTOSYLTRANSFERASE
    ChainsN
    EC Number2.4.1.151
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET15B
    Expression System Taxid562
    FragmentCATALYTIC DOMAIN
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    Other DetailsCALF THYMUS
    Synonym13GALT, ALPHA-1,3-GALACTOSYLTRANSFERASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit N

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 9)

Asymmetric/Biological Unit (1, 9)
No.NameCountTypeFull Name
1MSE9Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1FG5)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1FG5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1FG5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1FG5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1FG5)

(-) Exons   (3, 3)

Asymmetric/Biological Unit (3, 3)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSBTAT000000160331ENSBTAE00000262074chr11:95459665-95459416250GGTA1_BOVIN-00--
1.2ENSBTAT000000160332ENSBTAE00000262073chr11:95449479-9544938595GGTA1_BOVIN-00--
1.3ENSBTAT000000160333ENSBTAE00000262072chr11:95415347-95415232116GGTA1_BOVIN-00--
1.4ENSBTAT000000160334ENSBTAE00000262071chr11:95404542-9540445489GGTA1_BOVIN1-27270--
1.5ENSBTAT000000160335ENSBTAE00000262069chr11:95397952-9539791736GGTA1_BOVIN27-39130--
1.6ENSBTAT000000160336ENSBTAE00000262068chr11:95396284-9539621966GGTA1_BOVIN39-61230--
1.7ENSBTAT000000160337ENSBTAE00000262067chr11:95395659-9539556793GGTA1_BOVIN61-92321N:1-1111
1.8ENSBTAT000000160338ENSBTAE00000004437chr11:95387778-95387641138GGTA1_BOVIN92-138471N:11-5747
1.9ENSBTAT000000160339ENSBTAE00000130543chr11:95383311-95382365947GGTA1_BOVIN138-3682311N:57-277221

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain N from PDB  Type:PROTEIN  Length:277
 aligned with GGTA1_BOVIN | P14769 from UniProtKB/Swiss-Prot  Length:368

    Alignment length:277
                                    91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       
          GGTA1_BOVIN    82 KLKLSDWFNPFKRPEVVTMTKWKAPVVWEGTYNRAVLDNYYAKQKITVGLTVFAVGRYIEHYLEEFLTSANKHFMVGHPVIFYIMVDDVSRMPLIELGPLRSFKVFKIKPEKRWQDISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDKFGVETLGESVAQLQAWWYKADPNDFTYERRKESAAYIPFGEGDFYYHAAIFGGTPTQVLNITQECFKGILKDKKNDIEAQWHDESHLNKYFLLNKPTKILSPEYCWDYHIGLPADIKLVKMSWQT 358
               SCOP domains d1fg5n_ N: alpha-1,3-galactosyltransferase catalytic domain                                                                                                                                                                                                                           SCOP domains
               CATH domains 1fg5N00 N:1-277 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh............ee.....hhhhhhhhhhh....eeeeeee.hhhhhhhhhhhhhhhhhhh.....eeeeeee..............eeeeeee..........hhhhhhhhhhhhhhhhhhhh.eeeeee..eee....hhhhh..eeeee................................eeeeeeeehhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh...eee.hhhh.hhhhh.........eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.7   ---------------------------------------------Exon 1.9  PDB: N:57-277 UniProt: 138-368 [INCOMPLETE]                                                                                                                                                                         Transcript 1 (1)
           Transcript 1 (2) ----------Exon 1.8  PDB: N:11-57 UniProt: 92-138         ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1fg5 N   1 KLKLSDWFNPFKRPEVVTmTKWKAPVVWEGTYNRAVLDNYYAKQKITVGLTVFAVGRYIEHYLEEFLTSANKHFmVGHPVIFYImVDDVSRmPLIELGPLRSFKVFKIKPEKRWQDISmmRmKTIGEHIVAHIQHEVDFLFCmDVDQVFQDKFGVETLGESVAQLQAWWYKADPNDFTYERRKESAAYIPFGEGDFYYHAAIFGGTPTQVLNITQECFKGILKDKKNDIEAQWHDESHLNKYFLLNKPTKILSPEYCWDYHIGLPADIKLVKmSWQT 277
                                    10        20        30        40        50        60        70    |   80    |   90 |     100       110       120 |     130       140  |    150       160       170       180       190       200       210       220       230       240       250       260       270  |    
                                             19-MSE                                                  75-MSE    85-MSE 92-MSE                    119-MSE                 143-MSE                                                                                                                           273-MSE
                                                                                                                                                 120-MSE                                                                                                                                                         
                                                                                                                                                   122-MSE                                                                                                                                                       

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1FG5)

(-) Gene Ontology  (13, 13)

Asymmetric/Biological Unit(hide GO term definitions)
Chain N   (GGTA1_BOVIN | P14769)
molecular function
    GO:0047276    N-acetyllactosaminide 3-alpha-galactosyltransferase activity    Catalysis of the reaction: beta-D-galactosyl-(1,4)-beta-N-acetyl-D-glucosaminyl-R + UDP-galactose = alpha-D-galactosyl-(1,3)-beta-D-galactosyl-(1,4)-beta-N-acetyl-D-glucosaminyl-R + UDP.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016757    transferase activity, transferring glycosyl groups    Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
    GO:0016758    transferase activity, transferring hexosyl groups    Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor).
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0033580    protein galactosylation at cell surface    The addition of a galactose unit to a protein amino acid at the surface of a cell.
    GO:0006486    protein glycosylation    A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins.
cellular component
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0031985    Golgi cisterna    Any of the thin, flattened membrane-bounded compartments that form the central portion of the Golgi complex.
    GO:0032580    Golgi cisterna membrane    The lipid bilayer surrounding any of the thin, flattened compartments that form the central portion of the Golgi complex.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GGTA1_BOVIN | P147691g8o 1g93 1gwv 1gww 1gx0 1gx4 1k4v 1o7o 1o7q 1vzt 1vzu 1vzx 2jcj 2jck 2jcl 2jco 2vfz 2vs3 2vs4 2vs5 2vxl 2vxm 2wgz

(-) Related Entries Specified in the PDB File

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