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(-) Description

Title :  CRYSTAL STRUCTURE OF BENZYL ALCOHOL DEHYDROGENASE FROM ACINETOBACTER CALCOACETICUS
 
Authors :  J. C. Beauchamp, D. Gillooly, J. Warwicker, C. A. Fewson, A. J. Lapthorn
Date :  30 Jun 00  (Deposition) - 08 Jul 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Alcohol Dehydrogenase, Rossmann Fold, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. C. Beauchamp, D. Gillooly, J. Warwicker, C. A. Fewson, A. J. Lapthor
Crystal Structure Of Benzyl Alcohol Dehydrogenase From Acinetobacter Calcoaceticus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BENZYL ALCOHOL DEHYDROGENASE
    Chains: A
    EC Number: 1.1.1.90
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PTB361
    Organism Scientific: ACINETOBACTER CALCOACETICUS
    Organism Taxid: 471

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 6)

Asymmetric Unit (4, 6)
No.NameCountTypeFull Name
1EOH1Ligand/IonETHANOL
2NAD1Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
3SO42Ligand/IonSULFATE ION
4ZN2Ligand/IonZINC ION
Biological Unit 1 (3, 16)
No.NameCountTypeFull Name
1EOH4Ligand/IonETHANOL
2NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
3SO48Ligand/IonSULFATE ION
4ZN-1Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:44 , HIS A:65 , CYS A:173 , EOH A:374BINDING SITE FOR RESIDUE ZN A 372
2AC2SOFTWARECYS A:94 , GLY A:95 , CYS A:97 , CYS A:100 , CYS A:108BINDING SITE FOR RESIDUE ZN A 373
3AC3SOFTWARETHR A:79 , ARG A:114 , SER A:121 , ARG A:152 , HOH A:580BINDING SITE FOR RESIDUE SO4 A 376
4AC4SOFTWARELYS A:323 , GLU A:327 , ARG A:330 , HOH A:411 , HOH A:535BINDING SITE FOR RESIDUE SO4 A 377
5AC5SOFTWAREHIS A:45 , THR A:46 , THR A:177 , GLY A:200 , ALA A:201 , VAL A:202 , ASP A:222 , ARG A:227 , SER A:265 , THR A:266 , VAL A:288 , VAL A:314 , VAL A:315 , GLU A:316 , EOH A:374 , HOH A:387 , HOH A:388 , HOH A:443BINDING SITE FOR RESIDUE NAD A 375
6AC6SOFTWARETHR A:46 , PHE A:140 , CYS A:173 , GLU A:316 , ZN A:372 , NAD A:375BINDING SITE FOR RESIDUE EOH A 374

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1F8F)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Leu A:59 -Pro A:60

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1F8F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1F8F)

(-) Exons   (0, 0)

(no "Exon" information available for 1F8F)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:362
 aligned with Q59096_ACICA | Q59096 from UniProtKB/TrEMBL  Length:371

    Alignment length:368
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363        
         Q59096_ACICA     4 LKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQYYPVPLPAVLGHEGSGIIEAIGPNVTELQVGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSLVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGRPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKFYAFDEINQAAIDSHKGITLKPIIKIA 371
               SCOP domains d1f8fa1 A:4-162,A:337-371 Benzyl alcohol dehydrogenase                                                                                                         d1f8fa2 A:163-336 Benzyl alcohol dehydrogenase                                                                                                                                d1f8fa1 A:4-162,A:337-371           SCOP domains
               CATH domains 1f8fA01 A:4-177,A:315-371 Medium-chain alcohol dehydrogenases, catalytic domain                                                                                               1f8fA02 A:178-314 NAD(P)-binding Rossmann-like Domain                                                                                    1f8fA01 A:4-177,A:315-371                                 CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee........eeeeeee......eeeeeeeeee.hhhhhhhhh.............eeeeeeeee...........eeee.......hhhhhhhhhhhh.hhhhhh...........ee------...hhhhh.....eeeee...eeee....hhhhhhhhhhhhhhhhhhhhh........eeeee..hhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh..eeee....hhhhhhhhhh...eeeeee...hhhhhhhhhhheeeeeeeee............hhhhhhhh..eeee.hhhhhhhhhhhhhhhhhhhh...hhhh.eeeee..hhhhhhhhhhh....eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1f8f A   4 LKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVPLPAVLGHEGSGIIEAIGPNVTELQVGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALC------VNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKFYAFDEINQAAIDSRKGITLKPIIKIA 371
                                    13        23        33        43        53        63        73        83        93       103       113       123    |    - |     143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363        
                                                                                                                                                      128    135
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1F8F)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q59096_ACICA | Q59096)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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