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(-) Description

Title :  CRYSTAL STRUCTURE OF ADF1 FROM ARABIDOPSIS THALIANA
 
Authors :  G. D. Bowman, I. M. Nodelman, U. Lindberg, N. H. Chua, C. E. Schutt
Date :  27 Jun 00  (Deposition) - 15 Nov 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Kink In Alpha-Helix 3, Plant Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. D. Bowman, I. M. Nodelman, Y. Hong, N. H. Chua, U. Lindberg, C. E. Schutt
A Comparative Structural Analysis Of The Adf/Cofilin Family.
Proteins V. 41 374 2000 (for further references see the PDB file header)

(-) Compounds

Molecule 1 - ACTIN DEPOLYMERIZING FACTOR (ADF)
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET16B
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: ACTIN BINDING DOMAIN
    Organism Common: THALE CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1LDA1Ligand/IonLAURYL DIMETHYLAMINE-N-OXIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:53 , LEU A:60 , ALA A:62 , TYR A:70 , PHE A:72 , ASP A:125BINDING SITE FOR RESIDUE LDA A 900

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1F7S)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1F7S)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1F7S)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ADF_HPS51263 ADF-H domain profile.ADF1_ARATH5-139  1A:5-128

(-) Exons   (0, 0)

(no "Exon" information available for 1F7S)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:124
 aligned with ADF1_ARATH | Q39250 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:124
                                    14        24        34        44        54        64        74        84        94       104       114       124    
           ADF1_ARATH     5 ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTE 128
               SCOP domains d1f7sa_ A: Cofilin (actin depolymerizing factor, ADF)                                                                        SCOP domains
               CATH domains 1f7sA00 A:5-128 Severin                                                                                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eehhhhhhhhhhhhhhh...eeeeeee....eeeeeee.....hhhhhhh.......eeeeeeeeee.....eeeeeeeeee.....hhhhhhhhhhhhhhhhh......eeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ADF_H  PDB: A:5-128 UniProt: 5-139                                                                                           PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 1f7s A   5 ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTE 128
                                    14        24        34        44        54        64        74        84        94       104       114       124
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1F7S)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (ADF1_ARATH | Q39250)
molecular function
    GO:0003779    actin binding    Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
biological process
    GO:0030042    actin filament depolymerization    Disassembly of actin filaments by the removal of actin monomers from a filament.
cellular component
    GO:0015629    actin cytoskeleton    The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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 Related Entries

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(-) Related Entries Specified in the PDB File

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1ak6 NMR STRUCTURES OF DESTRIN FROM HOMO SAPIEN
1cnu CRYSTAL STRUCTURE OF PHOSPHORYLATED ACTOPHORIN FROM ACANTHAMOEBA POLYPHAGA
1cof CRYSTAL STRUCTURE OF COFILIN FROM SACCHAROMYCES CEREVISIAE