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(-) Description

Title :  CRYSTAL STRUCTURE OF OUTER SURFACE PROTEIN C (OSPC)
 
Authors :  D. Kumaran, S. Eswaramoorthy, J. J. Dunn, S. Swaminathan
Date :  19 May 00  (Deposition) - 04 Apr 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Lyme Disease, Ospc, Hb19, Helical Bundle, Dimer, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Kumaran, S. Eswaramoorthy, B. J. Luft, S. Koide, J. J. Dunn, C. L. Lawson, S. Swaminathan
Crystal Structure Of Outer Surface Protein C (Ospc) From The Lyme Disease Spirochete, Borrelia Burgdorferi.
Embo J. V. 20 971 2001
PubMed-ID: 11230121  |  Reference-DOI: 10.1093/EMBOJ/20.5.971
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - OUTER SURFACE PROTEIN C
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RESIDUES 38-201
    Mutation: YES
    Organism Common: LYME DISEASE SPIROCHETE
    Organism Scientific: BORRELIA BURGDORFERI
    Organism Taxid: 139
    Strain: HB19
    Synonym: OSPC

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1ZN6Ligand/IonZINC ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:92 , HOH A:809 , HOH A:896 , HOH A:959 , HOH A:960BINDING SITE FOR RESIDUE ZN A 801
2AC2SOFTWAREHIS B:142 , HOH B:968 , HOH B:983BINDING SITE FOR RESIDUE ZN B 802
3AC3SOFTWAREHIS B:92 , HOH B:912 , HOH B:913 , HOH B:967 , HOH B:984BINDING SITE FOR RESIDUE ZN B 803
4AC4SOFTWAREHIS C:92 , HOH C:822 , HOH C:859BINDING SITE FOR RESIDUE ZN C 804
5AC5SOFTWAREHIS D:142 , HOH D:957BINDING SITE FOR RESIDUE ZN D 805
6AC6SOFTWAREHIS D:92 , HOH D:920 , HOH D:926 , HOH D:933BINDING SITE FOR RESIDUE ZN D 806

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1F1M)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Ser A:200 -Pro A:201
2Ser B:200 -Pro B:201
3Ser C:200 -Pro C:201
4Ser D:200 -Pro D:201

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1F1M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1F1M)

(-) Exons   (0, 0)

(no "Exon" information available for 1F1M)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:162
 aligned with Q9AGB1_BORBG | Q9AGB1 from UniProtKB/TrEMBL  Length:165

    Alignment length:162
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163  
         Q9AGB1_BORBG     4 PNLTEISKKITESNAVVLAVKEVETLLTSIDELAKAIGKKIKNDVSLDNEADHNGSLMSGAYLISTLITKKISAIKDSGELKAEIEKAKKCSEEFTAKLKGEHTDLGKEGVTDDNAKKAILKTNNDKTKGADELEKLFESVKNLSKAAKEMLTNSVKELTSP 165
               SCOP domains d1f1ma_ A: Outer surface protein C (OspC)                                                                                                                          SCOP domains
               CATH domains 1f1mA00 A:40-201  [code=1.20.120.240, no name defined]                                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee.......ee....hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1f1m A  40 PNLTEISKKITESNAVVLAVKEVETLLTSIDELAKAIGKKIKSDVSLDNEADHNGSLMSGAYLISTLITKKISAIKDSGELKAEIEKAKKCSEEFTAKLKGEHTDLGKEGVTDDNAKKAILKTNNDKTKGADELEKLFESVKNLSKAAKEMLTNSVKELTSP 201
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199  


Chain B from PDB  Type:PROTEIN  Length:162
 aligned with Q9AGB1_BORBG | Q9AGB1 from UniProtKB/TrEMBL  Length:165

    Alignment length:162
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163  
         Q9AGB1_BORBG     4 PNLTEISKKITESNAVVLAVKEVETLLTSIDELAKAIGKKIKNDVSLDNEADHNGSLMSGAYLISTLITKKISAIKDSGELKAEIEKAKKCSEEFTAKLKGEHTDLGKEGVTDDNAKKAILKTNNDKTKGADELEKLFESVKNLSKAAKEMLTNSVKELTSP 165
               SCOP domains d1f1mb_ B: Outer surface protein C (OspC)                                                                                                                          SCOP domains
               CATH domains 1f1mB00 B:40-201  [code=1.20.120.240, no name defined]                                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee.......ee....hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1f1m B  40 PNLTEISKKITESNAVVLAVKEVETLLTSIDELAKAIGKKIKSDVSLDNEADHNGSLMSGAYLISTLITKKISAIKDSGELKAEIEKAKKCSEEFTAKLKGEHTDLGKEGVTDDNAKKAILKTNNDKTKGADELEKLFESVKNLSKAAKEMLTNSVKELTSP 201
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199  


Chain C from PDB  Type:PROTEIN  Length:162
 aligned with Q9AGB1_BORBG | Q9AGB1 from UniProtKB/TrEMBL  Length:165

    Alignment length:162
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163  
         Q9AGB1_BORBG     4 PNLTEISKKITESNAVVLAVKEVETLLTSIDELAKAIGKKIKNDVSLDNEADHNGSLMSGAYLISTLITKKISAIKDSGELKAEIEKAKKCSEEFTAKLKGEHTDLGKEGVTDDNAKKAILKTNNDKTKGADELEKLFESVKNLSKAAKEMLTNSVKELTSP 165
               SCOP domains d1f1mc_ C: Outer surface protein C (OspC)                                                                                                                          SCOP domains
               CATH domains 1f1mC00 C:40-201  [code=1.20.120.240, no name defined]                                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee.......ee....hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1f1m C  40 PNLTEISKKITESNAVVLAVKEVETLLTSIDELAKAIGKKIKSDVSLDNEADHNGSLMSGAYLISTLITKKISAIKDSGELKAEIEKAKKCSEEFTAKLKGEHTDLGKEGVTDDNAKKAILKTNNDKTKGADELEKLFESVKNLSKAAKEMLTNSVKELTSP 201
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199  


Chain D from PDB  Type:PROTEIN  Length:162
 aligned with Q9AGB1_BORBG | Q9AGB1 from UniProtKB/TrEMBL  Length:165

    Alignment length:162
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163  
         Q9AGB1_BORBG     4 PNLTEISKKITESNAVVLAVKEVETLLTSIDELAKAIGKKIKNDVSLDNEADHNGSLMSGAYLISTLITKKISAIKDSGELKAEIEKAKKCSEEFTAKLKGEHTDLGKEGVTDDNAKKAILKTNNDKTKGADELEKLFESVKNLSKAAKEMLTNSVKELTSP 165
               SCOP domains d1f1md_ D: Outer surface protein C (OspC)                                                                                                                          SCOP domains
               CATH domains 1f1mD00 D:40-201  [code=1.20.120.240, no name defined]                                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee.......ee....hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1f1m D  40 PNLTEISKKITESNAVVLAVKEVETLLTSIDELAKAIGKKIKSDVSLDNEADHNGSLMSGAYLISTLITKKISAIKDSGELKAEIEKAKKCSEEFTAKLKGEHTDLGKEGVTDDNAKKAILKTNNDKTKGADELEKLFESVKNLSKAAKEMLTNSVKELTSP 201
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1F1M)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q9AGB1_BORBG | Q9AGB1)
biological process
    GO:0006952    defense response    Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.

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