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(-) Description

Title :  COMPUTER MODEL OF A COVALENT COMPLEX BETWEEN D(TAACGGTTA) AND ANTITUMOR DRUG ECTEINASCIDIN 743
 
Authors :  R. Garcia-Nieto, I. Manzanares, C. Cuevas, F. Gago
Date :  10 May 00  (Deposition) - 22 May 00  (Release) - 28 Aug 00  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A,B,_#
#:   chains that contain no standard or modified protein/DNA/RNA residue)
 
Keywords :  Anticancer, Dna, Ecteinascidin, Deoxyribonucleic Acid, Dna Bending (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  R. Garcia-Nieto, I. Manzanares, C. Cuevas, F. Gago
Bending Of Dna Upon Binding Of Ecteinascidin 743 And Phthalascidin 650 Studied By Unrestrained Molecular Dynamics Simulations
J. Am. Chem. Soc. V. 122 7172 2000
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*TP*AP*AP*CP*GP*GP*TP*TP*A)-3')
    ChainsA
    EngineeredYES
    Other DetailsCOVALENT ADDUCT BETWEEN ET743 AND DNA
    SyntheticYES
 
Molecule 2 - DNA (5'-D(*TP*AP*AP*CP*CP*GP*TP*TP*A)-3')
    ChainsB
    EngineeredYES
    SyntheticYES

 Structural Features

(-) Chains, Units

  
Theoretical Model 
#:   chains that contain no standard or modified protein/DNA/RNA residue)
 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Theoretical Model (1, 1)
No.NameCountTypeFull Name
1ECT1Ligand/IonECTEINASCIDIN 743

(-) Sites  (0, 0)

(no "Site" information available for 1EZH)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1EZH)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1EZH)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:9
                                        
                  1ezh A  1 TAACGGTTA  9

Chain B from PDB  Type:DNA  Length:9
                                        
                  1ezh B 10 TAACCGTTA 18

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Theoretical Model(hide GO term definitions)
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